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[bug#48575] [PATCH 17/50] gnu: r-deseq: Move to (gnu packages bioconduct
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 17/50] gnu: r-deseq: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:25:49 +0200 |
* gnu/packages/bioinformatics.scm (r-deseq): Move from here...
* gnu/packages/bioconductor.scm (r-deseq): ...to here.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 31 -------------------------------
2 files changed, 31 insertions(+), 31 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e58cd66fef..69ef513bc6 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2013,6 +2013,37 @@ genome data packages and support for efficient SNP
representation.")
analysis.")
(license license:artistic2.0)))
+(define-public r-deseq
+ (package
+ (name "r-deseq")
+ (version "1.39.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DESeq" version))
+ (sha256
+ (base32
+ "047hph5aqmjnz1aqprziw0smdn5lf96hmwpnvqrxv1j2yfvcf3h1"))))
+ (properties `((upstream-name . "DESeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-genefilter" ,r-genefilter)
+ ("r-geneplotter" ,r-geneplotter)
+ ("r-lattice" ,r-lattice)
+ ("r-locfit" ,r-locfit)
+ ("r-mass" ,r-mass)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)))
+ (home-page "https://www-huber.embl.de/users/anders/DESeq/")
+ (synopsis "Differential gene expression analysis")
+ (description
+ "This package provides tools for estimating variance-mean dependence in
+count data from high-throughput genetic sequencing assays and for testing for
+differential expression based on a model using the negative binomial
+distribution.")
+ (license license:gpl3+)))
+
(define-public r-deseq2
(package
(name "r-deseq2")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c8444eea9f..2edb501f9b 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9022,37 +9022,6 @@ their variance is independent of the mean, and they are
usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
-(define-public r-deseq
- (package
- (name "r-deseq")
- (version "1.39.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "DESeq" version))
- (sha256
- (base32
- "047hph5aqmjnz1aqprziw0smdn5lf96hmwpnvqrxv1j2yfvcf3h1"))))
- (properties `((upstream-name . "DESeq")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-genefilter" ,r-genefilter)
- ("r-geneplotter" ,r-geneplotter)
- ("r-lattice" ,r-lattice)
- ("r-locfit" ,r-locfit)
- ("r-mass" ,r-mass)
- ("r-rcolorbrewer" ,r-rcolorbrewer)))
- (home-page "https://www-huber.embl.de/users/anders/DESeq/")
- (synopsis "Differential gene expression analysis")
- (description
- "This package provides tools for estimating variance-mean dependence in
-count data from high-throughput genetic sequencing assays and for testing for
-differential expression based on a model using the negative binomial
-distribution.")
- (license license:gpl3+)))
-
(define-public r-edaseq
(package
(name "r-edaseq")
--
2.30.1
- [bug#48575] [PATCH 11/50] gnu: r-go-db: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 11/50] gnu: r-go-db: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 10/50] gnu: r-seqpattern: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 13/50] gnu: r-genomationdata: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 12/50] gnu: r-genomation: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 04/50] gnu: r-topgo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 14/50] gnu: r-pcamethods: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 15/50] gnu: r-mzid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 16/50] gnu: r-aroma-light: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 18/50] gnu: r-edaseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 20/50] gnu: r-annotationhub: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 17/50] gnu: r-deseq: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 23/50] gnu: r-keggrest: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 24/50] gnu: r-gage: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 19/50] gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 22/50] gnu: r-affy: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 21/50] gnu: r-fastseg: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 27/50] gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 25/50] gnu: r-complexheatmap: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 30/50] gnu: r-vsn: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 26/50] gnu: r-genomicfiles: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 28/50] gnu: r-organismdbi: Move to (gnu packages bioconductor)., zimoun, 2021/05/21