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[bug#48575] [PATCH 11/50] gnu: r-go-db: Move to (gnu packages bioconduct
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 11/50] gnu: r-go-db: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:25:43 +0200 |
* gnu/packages/bioinformatics.scm (r-go-db): Move from here...
* gnu/packages/bioconductor.scm (r-go-db): ...to here.
[source]: Replace 'string-append' by 'bioconductor-uri' with 'annotation.
---
gnu/packages/bioconductor.scm | 22 ++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 24 ------------------------
2 files changed, 22 insertions(+), 24 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1b1b00cde0..eb73909723 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -413,6 +413,28 @@ in Biostrings objects.")
ID and species. It is used by functions in the GenomeInfoDb package.")
(license license:artistic2.0)))
+(define-public r-go-db
+ (package
+ (name "r-go-db")
+ (version "3.7.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GO.db" version 'annotation))
+ (sha256
+ (base32
+ "0i3wcf5h3n0dawzc1hy0kv74f06j80c47n4p3g3fmrcxlhi3jpa5"))))
+ (properties
+ `((upstream-name . "GO.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://bioconductor.org/packages/GO.db")
+ (synopsis "Annotation maps describing the entire Gene Ontology")
+ (description
+ "The purpose of this GO.db annotation package is to provide detailed
+information about the latest version of the Gene Ontologies.")
+ (license license:artistic2.0)))
+
(define-public r-homo-sapiens
(package
(name "r-homo-sapiens")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 71e1481af2..71f07748b6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7849,30 +7849,6 @@ including VCF header and contents in RDF and JSON.")
(home-page "https://github.com/vcflib/bio-vcf")
(license license:expat)))
-(define-public r-go-db
- (package
- (name "r-go-db")
- (version "3.7.0")
- (source (origin
- (method url-fetch)
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/GO.db_"
- version ".tar.gz"))
- (sha256
- (base32
- "0i3wcf5h3n0dawzc1hy0kv74f06j80c47n4p3g3fmrcxlhi3jpa5"))))
- (properties
- `((upstream-name . "GO.db")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)))
- (home-page "https://bioconductor.org/packages/GO.db")
- (synopsis "Annotation maps describing the entire Gene Ontology")
- (description
- "The purpose of this GO.db annotation package is to provide detailed
-information about the latest version of the Gene Ontologies.")
- (license license:artistic2.0)))
-
(define-public r-genomation
(package
(name "r-genomation")
--
2.30.1
- [bug#48575] [PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 01/50] gnu: r-genomicalignments: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 03/50] gnu: r-genomicfeatures: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 02/50] gnu: r-rtracklayer: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 06/50] gnu: r-msnid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 05/50] gnu: r-bsgenome: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 07/50] gnu: r-msnbase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 08/50] gnu: r-samr: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 09/50] gnu: r-impute: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 11/50] gnu: r-go-db: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 10/50] gnu: r-seqpattern: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 13/50] gnu: r-genomationdata: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 12/50] gnu: r-genomation: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 04/50] gnu: r-topgo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 14/50] gnu: r-pcamethods: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 15/50] gnu: r-mzid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 16/50] gnu: r-aroma-light: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 18/50] gnu: r-edaseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 20/50] gnu: r-annotationhub: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 17/50] gnu: r-deseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21