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[bug#48575] [PATCH 10/50] gnu: r-seqpattern: Move to (gnu packages bioco
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 10/50] gnu: r-seqpattern: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:25:42 +0200 |
* gnu/packages/bioinformatics.scm (r-seqpattern): Move from here...
* gnu/packages/bioconductor.scm (r-seqpattern): ...to here.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 27 ---------------------------
2 files changed, 27 insertions(+), 27 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 0b40d70397..1b1b00cde0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2655,6 +2655,33 @@ differential expression analysis, RNAseq data and
related problems.")
;; Any version of the LGPL
(license license:lgpl3+)))
+(define-public r-seqpattern
+ (package
+ (name "r-seqpattern")
+ (version "1.22.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "seqPattern" version))
+ (sha256
+ (base32
+ "0j68n6fwycxjpl2va5fw7ajb123n758s2pq997d76dysxghmrlzq"))))
+ (properties
+ `((upstream-name . "seqPattern")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-kernsmooth" ,r-kernsmooth)
+ ("r-plotrix" ,r-plotrix)))
+ (home-page "https://bioconductor.org/packages/seqPattern")
+ (synopsis "Visualising oligonucleotide patterns and motif occurrences")
+ (description
+ "This package provides tools to visualize oligonucleotide patterns and
+sequence motif occurrences across a large set of sequences centred at a common
+reference point and sorted by a user defined feature.")
+ (license license:gpl3+)))
+
(define-public r-shortread
(package
(name "r-shortread")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ef5c1a3323..71e1481af2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7873,33 +7873,6 @@ including VCF header and contents in RDF and JSON.")
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
-(define-public r-seqpattern
- (package
- (name "r-seqpattern")
- (version "1.22.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "seqPattern" version))
- (sha256
- (base32
- "0j68n6fwycxjpl2va5fw7ajb123n758s2pq997d76dysxghmrlzq"))))
- (properties
- `((upstream-name . "seqPattern")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biostrings" ,r-biostrings)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-kernsmooth" ,r-kernsmooth)
- ("r-plotrix" ,r-plotrix)))
- (home-page "https://bioconductor.org/packages/seqPattern")
- (synopsis "Visualising oligonucleotide patterns and motif occurrences")
- (description
- "This package provides tools to visualize oligonucleotide patterns and
-sequence motif occurrences across a large set of sequences centred at a common
-reference point and sorted by a user defined feature.")
- (license license:gpl3+)))
-
(define-public r-genomation
(package
(name "r-genomation")
--
2.30.1
- [bug#48575] [PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 01/50] gnu: r-genomicalignments: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 03/50] gnu: r-genomicfeatures: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 02/50] gnu: r-rtracklayer: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 06/50] gnu: r-msnid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 05/50] gnu: r-bsgenome: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 07/50] gnu: r-msnbase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 08/50] gnu: r-samr: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 09/50] gnu: r-impute: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 11/50] gnu: r-go-db: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 10/50] gnu: r-seqpattern: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 13/50] gnu: r-genomationdata: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 12/50] gnu: r-genomation: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 04/50] gnu: r-topgo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 14/50] gnu: r-pcamethods: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 15/50] gnu: r-mzid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 16/50] gnu: r-aroma-light: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 18/50] gnu: r-edaseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 20/50] gnu: r-annotationhub: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 17/50] gnu: r-deseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 23/50] gnu: r-keggrest: Move to (gnu packages bioconductor)., zimoun, 2021/05/21