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[bug#48575] [PATCH 04/50] gnu: r-topgo: Move to (gnu packages bioconduct
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 04/50] gnu: r-topgo: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:25:36 +0200 |
* gnu/packages/bioinformatics.scm (r-topgo): Move from here...
* gnu/packages/bioconductor.scm (r-topgo): ...to here.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 33 ---------------------------------
2 files changed, 33 insertions(+), 33 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2263c17cc4..2afb5214ee 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2607,6 +2607,39 @@ experimental designs is facilitated by a consistently
implemented sample
annotation infrastructure.")
(license license:artistic2.0)))
+(define-public r-topgo
+ (package
+ (name "r-topgo")
+ (version "2.42.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "topGO" version))
+ (sha256
+ (base32
+ "0vr3l9gvd3dhy446k3fkj6rm7z1abxi56rbnrs64297yzxaz1ngl"))))
+ (properties
+ `((upstream-name . "topGO")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-dbi" ,r-dbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-go-db" ,r-go-db)
+ ("r-graph" ,r-graph)
+ ("r-lattice" ,r-lattice)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-sparsem" ,r-sparsem)))
+ (home-page "https://bioconductor.org/packages/topGO")
+ (synopsis "Enrichment analysis for gene ontology")
+ (description
+ "The topGO package provides tools for testing @dfn{gene ontology} (GO)
+terms while accounting for the topology of the GO graph. Different test
+statistics and different methods for eliminating local similarities and
+dependencies between GO terms can be implemented and applied.")
+ ;; Any version of the LGPL applies.
+ (license license:lgpl2.1+)))
+
(define-public r-variantannotation
(package
(name "r-variantannotation")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index bf8cb2f3a5..32d2b6a683 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7873,39 +7873,6 @@ including VCF header and contents in RDF and JSON.")
information about the latest version of the Gene Ontologies.")
(license license:artistic2.0)))
-(define-public r-topgo
- (package
- (name "r-topgo")
- (version "2.42.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "topGO" version))
- (sha256
- (base32
- "0vr3l9gvd3dhy446k3fkj6rm7z1abxi56rbnrs64297yzxaz1ngl"))))
- (properties
- `((upstream-name . "topGO")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)
- ("r-dbi" ,r-dbi)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-go-db" ,r-go-db)
- ("r-graph" ,r-graph)
- ("r-lattice" ,r-lattice)
- ("r-matrixstats" ,r-matrixstats)
- ("r-sparsem" ,r-sparsem)))
- (home-page "https://bioconductor.org/packages/topGO")
- (synopsis "Enrichment analysis for gene ontology")
- (description
- "The topGO package provides tools for testing @dfn{gene ontology} (GO)
-terms while accounting for the topology of the GO graph. Different test
-statistics and different methods for eliminating local similarities and
-dependencies between GO terms can be implemented and applied.")
- ;; Any version of the LGPL applies.
- (license license:lgpl2.1+)))
-
(define-public r-bsgenome
(package
(name "r-bsgenome")
--
2.30.1
- [bug#48575] [PATCH 02/50] gnu: r-rtracklayer: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 02/50] gnu: r-rtracklayer: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 06/50] gnu: r-msnid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 05/50] gnu: r-bsgenome: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 07/50] gnu: r-msnbase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 08/50] gnu: r-samr: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 09/50] gnu: r-impute: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 11/50] gnu: r-go-db: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 10/50] gnu: r-seqpattern: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 13/50] gnu: r-genomationdata: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 12/50] gnu: r-genomation: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 04/50] gnu: r-topgo: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 14/50] gnu: r-pcamethods: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 15/50] gnu: r-mzid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 16/50] gnu: r-aroma-light: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 18/50] gnu: r-edaseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 20/50] gnu: r-annotationhub: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 17/50] gnu: r-deseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 23/50] gnu: r-keggrest: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 24/50] gnu: r-gage: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 19/50] gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 22/50] gnu: r-affy: Move to (gnu packages bioconductor)., zimoun, 2021/05/21