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[Bammds-users] Fwd: bammds

From: Ole Tange
Subject: [Bammds-users] Fwd: bammds
Date: Wed, 24 Sep 2014 16:12:18 +0200

>From Niall's description alone I cannot solve this.

I believe we support standard BAM, so my initial guess is that Niall's
file is somehow non-standard and thus I would require an example file
to see what goes on.

Can anyone else pitch in?


---------- Forwarded message ----------
From: OSullivan Niall <address@hidden>
Date: Wed, Sep 24, 2014 at 11:33 AM
Subject: bammds
To: "address@hidden" <address@hidden>

Dear Ole Tange,

I am trying to use your bammds program to make a PCA plot of two
merged shotgun programs. It asks me to change the notation and order
of the chromosomes. I have tried to change the notation and order, but
it results in the same error message. I would like to enquire if you
have a script or method for converting bam files from the standard
format to the one that is compatible with your program. I have
searched online and been unable to find a solution.

Best regards



Niall O’Sullivan, BA, MSc


EURAC research

Institute for Mummies and the Iceman

Piazza Angela Nikoletti 14, I-39100

Bolzano, Italy

Tel: +39 0471 055 560

Fax: +39 0471 055 579

Email: address@hidden

PhD candidate

School of Archaeology

University College Dublin


Dublin 4, Ireland

Email: address@hidden

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