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[Bammds-users] Fwd: bammds
From: |
Ole Tange |
Subject: |
[Bammds-users] Fwd: bammds |
Date: |
Wed, 24 Sep 2014 17:25:40 +0200 |
>From Niall's description alone I cannot solve this.
I believe we support standard BAM, so my initial guess is that Niall's
file is somehow non-standard and thus I would require an example file
to see what goes on.
Can anyone else pitch in?
/Ole
---------- Forwarded message ----------
From: OSullivan Niall <address@hidden>
Date: Wed, Sep 24, 2014 at 11:33 AM
Subject: bammds
Dear Ole Tange,
I am trying to use your bammds program to make a PCA plot of two
merged shotgun programs. It asks me to change the notation and order
of the chromosomes. I have tried to change the notation and order, but
it results in the same error message. I would like to enquire if you
have a script or method for converting bam files from the standard
format to the one that is compatible with your program. I have
searched online and been unable to find a solution.
Best regards
Niall
--------------------------------------------------------
Niall O’Sullivan, BA, MSc
Researcher
EURAC research
Institute for Mummies and the Iceman
Piazza Angela Nikoletti 14, I-39100
Bolzano, Italy
Tel: +39 0471 055 560
Fax: +39 0471 055 579
Email: address@hidden
PhD candidate
School of Archaeology
University College Dublin
Belfield
Dublin 4, Ireland
Email: address@hidden
- [Bammds-users] Fwd: bammds, Ole Tange, 2014/09/24
- [Bammds-users] Fwd: bammds,
Ole Tange <=
- Re: [Bammds-users] bammds, OSullivan Niall, 2014/09/25
- Re: [Bammds-users] bammds, Ole Tange, 2014/09/25
- Re: [Bammds-users] bammds, OSullivan Niall, 2014/09/25
- Re: [Bammds-users] bammds, Anna-Sapfo, 2014/09/26
- Re: [Bammds-users] bammds, OSullivan Niall, 2014/09/26
- Re: [Bammds-users] bammds, José Víctor Moreno Mayar, 2014/09/26
- Re: [Bammds-users] bammds, Anna-Sapfo, 2014/09/30
- Re: [Bammds-users] bammds, OSullivan Niall, 2014/09/30