[Top][All Lists]

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Re: [Bammds-users] bammds

From: Anna-Sapfo
Subject: Re: [Bammds-users] bammds
Date: Fri, 26 Sep 2014 08:26:02 +0200
User-agent: Mozilla/5.0 (Windows NT 6.1; WOW64; rv:24.0) Gecko/20100101 Thunderbird/24.6.0

Hello Niall,
We would like to fix the bug so it works with your file as well.
Could you just copy paste the header of your bam file (samtools view -H)?

I will upload our reference to an ftp site for you but its a busy day so i dont know if i will get to it today.


On 25-09-2014 17:18, OSullivan Niall wrote:
I can't, the data is far too confidential to be circulated now.

The genome was downloaded from here



-----Original Message-----
From: address@hidden [mailto:address@hidden On Behalf Of Ole Tange
Sent: giovedì 25 settembre 2014 16.48
To: OSullivan Niall
Cc: address@hidden
Subject: Re: bammds

On Thu, Sep 25, 2014 at 4:39 PM, OSullivan Niall <address@hidden> wrote:
I think it may be the reference file that was used for the bwa mapping. I used 
HG19 and I downloaded it directly from UCSC. You used a different one, but from 
Can you give me access to all the data you used, so I can reproduce your 
problem? And a link to the HG19 file you used.


reply via email to

[Prev in Thread] Current Thread [Next in Thread]