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[bug#48575] [PATCH 45/50] gnu: r-annotationfilter: Move to (gnu packages
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 45/50] gnu: r-annotationfilter: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:26:17 +0200 |
* gnu/packages/bioinformatics.scm (r-annotationfilter): Move from here...
* gnu/packages/bioconductor.scm (r-annotationfilter): ...to here.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 26 --------------------------
2 files changed, 26 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8695f13ed8..87b879ad94 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1804,6 +1804,32 @@ microarrays.")
annotation data packages using SQLite data storage.")
(license license:artistic2.0)))
+(define-public r-annotationfilter
+ (package
+ (name "r-annotationfilter")
+ (version "1.14.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationFilter" version))
+ (sha256
+ (base32
+ "0npk0laa2rc93rsh6yikj886zf2fl53a050j07fj9w67j0q0h3s9"))))
+ (properties
+ `((upstream-name . "AnnotationFilter")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomicranges" ,r-genomicranges)
+ ("r-lazyeval" ,r-lazyeval)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/Bioconductor/AnnotationFilter")
+ (synopsis "Facilities for filtering Bioconductor annotation resources")
+ (description
+ "This package provides classes and other infrastructure to implement
+filters for manipulating Bioconductor annotation resources. The filters are
+used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.")
+ (license license:artistic2.0)))
+
(define-public r-annotationforge
(package
(name "r-annotationforge")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2907d65b38..7ad51d3518 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8029,32 +8029,6 @@ package, and for letting R applications work on datasets
that are larger than
the available RAM.")
(license license:artistic2.0)))
-(define-public r-annotationfilter
- (package
- (name "r-annotationfilter")
- (version "1.14.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "AnnotationFilter" version))
- (sha256
- (base32
- "0npk0laa2rc93rsh6yikj886zf2fl53a050j07fj9w67j0q0h3s9"))))
- (properties
- `((upstream-name . "AnnotationFilter")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-genomicranges" ,r-genomicranges)
- ("r-lazyeval" ,r-lazyeval)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://github.com/Bioconductor/AnnotationFilter")
- (synopsis "Facilities for filtering Bioconductor annotation resources")
- (description
- "This package provides classes and other infrastructure to implement
-filters for manipulating Bioconductor annotation resources. The filters are
-used by @code{ensembldb}, @code{Organism.dplyr}, and other packages.")
- (license license:artistic2.0)))
-
(define-public emboss
(package
(name "emboss")
--
2.30.1
- [bug#48575] [PATCH 43/50] gnu: r-tximport: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 43/50] gnu: r-tximport: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 34/50] gnu: r-protgenerics: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 37/50] gnu: r-seqlogo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 38/50] gnu: r-zlibbioc: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 29/50] gnu: r-affyio: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 41/50] gnu: r-rcas: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 42/50] gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 44/50] gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 48/50] gnu: r-copyhelper: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 46/50] gnu: r-rhdf5: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 45/50] gnu: r-annotationfilter: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 47/50] gnu: r-chipseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 50/50] gnu: r-methylkit: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 49/50] gnu: r-copywriter: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 39/50] gnu: r-rhtslib: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 40/50] gnu: r-bamsignals: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- bug#48575: [PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/05/31