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[bug#48575] [PATCH 29/50] gnu: r-affyio: Move to (gnu packages bioconduc
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 29/50] gnu: r-affyio: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:26:01 +0200 |
* gnu/packages/bioinformatics.scm (r-affyio): Move from here...
* gnu/packages/bioconductor.scm (r-affyio): ...to here.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 24 ------------------------
2 files changed, 24 insertions(+), 24 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c63d39dc9c..d0ebcf8481 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1694,6 +1694,30 @@ problems in CEL-level data to help evaluate performance
of quality metrics.")
to streamline the more common analyses that a Biostatistician might see.")
(license license:artistic2.0)))
+(define-public r-affyio
+ (package
+ (name "r-affyio")
+ (version "1.60.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "affyio" version))
+ (sha256
+ (base32
+ "14xnzrxrvgxgixjhq5a9fdgcmrxam2j74hwidkc9if92ffv6s83h"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-zlibbioc" ,r-zlibbioc)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://github.com/bmbolstad/affyio")
+ (synopsis "Tools for parsing Affymetrix data files")
+ (description
+ "This package provides routines for parsing Affymetrix data files based
+upon file format information. The primary focus is on accessing the CEL and
+CDF file formats.")
+ (license license:lgpl2.0+)))
+
(define-public r-affxparser
(package
(name "r-affxparser")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1c90700c95..7256df3f83 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8934,30 +8934,6 @@ proteowizard library for mzML and mzIdentML. The netCDF
reading code has
previously been used in XCMS.")
(license license:artistic2.0)))
-(define-public r-affyio
- (package
- (name "r-affyio")
- (version "1.60.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "affyio" version))
- (sha256
- (base32
- "14xnzrxrvgxgixjhq5a9fdgcmrxam2j74hwidkc9if92ffv6s83h"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-zlibbioc" ,r-zlibbioc)))
- (inputs
- `(("zlib" ,zlib)))
- (home-page "https://github.com/bmbolstad/affyio")
- (synopsis "Tools for parsing Affymetrix data files")
- (description
- "This package provides routines for parsing Affymetrix data files based
-upon file format information. The primary focus is on accessing the CEL and
-CDF file formats.")
- (license license:lgpl2.0+)))
-
(define-public r-vsn
(package
(name "r-vsn")
--
2.30.1
- [bug#48575] [PATCH 28/50] gnu: r-organismdbi: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 28/50] gnu: r-organismdbi: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 31/50] gnu: r-biovizbase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 32/50] gnu: r-ensembldb: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 35/50] gnu: r-sva: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 33/50] gnu: r-mzr: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 36/50] gnu: r-motifrg: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 43/50] gnu: r-tximport: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 34/50] gnu: r-protgenerics: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 37/50] gnu: r-seqlogo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 38/50] gnu: r-zlibbioc: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 29/50] gnu: r-affyio: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 41/50] gnu: r-rcas: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 42/50] gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 44/50] gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 48/50] gnu: r-copyhelper: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 46/50] gnu: r-rhdf5: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 45/50] gnu: r-annotationfilter: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 47/50] gnu: r-chipseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 50/50] gnu: r-methylkit: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 49/50] gnu: r-copywriter: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 39/50] gnu: r-rhtslib: Move to (gnu packages bioconductor)., zimoun, 2021/05/21