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[bug#48575] [PATCH 40/50] gnu: r-bamsignals: Move to (gnu packages bioco
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 40/50] gnu: r-bamsignals: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:26:12 +0200 |
* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here...
* gnu/packages/bioconductor.scm (r-bamsignals): ...to here.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 30 ------------------------------
2 files changed, 30 insertions(+), 30 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 8e78a2a0ca..99607ba564 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1904,6 +1904,36 @@ standalone, be utilized in other packages, or be wrapped
up in higher-level
classes.")
(license license:gpl2+)))
+(define-public r-bamsignals
+ (package
+ (name "r-bamsignals")
+ (version "1.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "bamsignals" version))
+ (sha256
+ (base32
+ "0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rhtslib" ,r-rhtslib)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/bamsignals")
+ (synopsis "Extract read count signals from bam files")
+ (description
+ "This package efficiently obtains count vectors from indexed bam
+files. It counts the number of nucleotide sequence reads in given genomic
+ranges and it computes reads profiles and coverage profiles. It also handles
+paired-end data.")
+ (license license:gpl2+)))
+
(define-public r-biobase
(package
(name "r-biobase")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 586efcf21e..ae61ecae74 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7872,36 +7872,6 @@ including VCF header and contents in RDF and JSON.")
secondary structure and comparative analysis in R.")
(license license:gpl3+)))
-(define-public r-bamsignals
- (package
- (name "r-bamsignals")
- (version "1.22.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "bamsignals" version))
- (sha256
- (base32
- "0p3r9z9z5sfkd0b951cgr751k4z0yviyn1jfw9d4fcnyld7g1jxv"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-rcpp" ,r-rcpp)
- ("r-rhtslib" ,r-rhtslib)
- ("r-zlibbioc" ,r-zlibbioc)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/bamsignals")
- (synopsis "Extract read count signals from bam files")
- (description
- "This package efficiently obtains count vectors from indexed bam
-files. It counts the number of nucleotide sequence reads in given genomic
-ranges and it computes reads profiles and coverage profiles. It also handles
-paired-end data.")
- (license license:gpl2+)))
-
(define-public r-rcas
(package
(name "r-rcas")
--
2.30.1
- [bug#48575] [PATCH 41/50] gnu: r-rcas: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 41/50] gnu: r-rcas: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 42/50] gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 44/50] gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 48/50] gnu: r-copyhelper: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 46/50] gnu: r-rhdf5: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 45/50] gnu: r-annotationfilter: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 47/50] gnu: r-chipseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 50/50] gnu: r-methylkit: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 49/50] gnu: r-copywriter: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 39/50] gnu: r-rhtslib: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 40/50] gnu: r-bamsignals: Move to (gnu packages bioconductor).,
zimoun <=
- bug#48575: [PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/05/31