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[bug#48575] [PATCH 36/50] gnu: r-motifrg: Move to (gnu packages biocondu
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 36/50] gnu: r-motifrg: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:26:08 +0200 |
* gnu/packages/bioinformatics.scm (r-motifrg): Move from here...
* gnu/packages/bioconductor.scm (r-motifrg): ...to here.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 27 ---------------------------
2 files changed, 27 insertions(+), 27 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a7b1c63b56..47a245b4f5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2924,6 +2924,33 @@ and the assessment of differential expression. The
analysis methods apply to
different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(license license:gpl2+)))
+(define-public r-motifrg
+ (package
+ (name "r-motifrg")
+ (version "1.31.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "motifRG" version))
+ (sha256
+ (base32
+ "1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
+ (properties `((upstream-name . "motifRG")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
+ ("r-iranges" ,r-iranges)
+ ("r-seqlogo" ,r-seqlogo)
+ ("r-xvector" ,r-xvector)))
+ (home-page "https://bioconductor.org/packages/motifRG")
+ (synopsis "Discover motifs in high throughput sequencing data")
+ (description
+ "This package provides tools for discriminative motif discovery in high
+throughput genetic sequencing data sets using regression methods.")
+ (license license:artistic2.0)))
+
(define-public r-msnbase
(package
(name "r-msnbase")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2cc41b7e98..e2000ccb68 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7872,33 +7872,6 @@ plots the corresponding sequence logo as introduced by
Schneider and
Stephens (1990).")
(license license:lgpl2.0+)))
-(define-public r-motifrg
- (package
- (name "r-motifrg")
- (version "1.31.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "motifRG" version))
- (sha256
- (base32
- "1ml6zyzlk8yjbnfhga2qnw8nl43rankvka0kc1yljxr2b66aqbhn"))))
- (properties `((upstream-name . "motifRG")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biostrings" ,r-biostrings)
- ("r-bsgenome" ,r-bsgenome)
- ("r-bsgenome-hsapiens-ucsc-hg19" ,r-bsgenome-hsapiens-ucsc-hg19)
- ("r-iranges" ,r-iranges)
- ("r-seqlogo" ,r-seqlogo)
- ("r-xvector" ,r-xvector)))
- (home-page "https://bioconductor.org/packages/motifRG")
- (synopsis "Discover motifs in high throughput sequencing data")
- (description
- "This package provides tools for discriminative motif discovery in high
-throughput genetic sequencing data sets using regression methods.")
- (license license:artistic2.0)))
-
(define-public r-zlibbioc
(package
(name "r-zlibbioc")
--
2.30.1
- [bug#48575] [PATCH 21/50] gnu: r-fastseg: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 21/50] gnu: r-fastseg: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 27/50] gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 25/50] gnu: r-complexheatmap: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 30/50] gnu: r-vsn: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 26/50] gnu: r-genomicfiles: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 28/50] gnu: r-organismdbi: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 31/50] gnu: r-biovizbase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 32/50] gnu: r-ensembldb: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 35/50] gnu: r-sva: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 33/50] gnu: r-mzr: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 36/50] gnu: r-motifrg: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 43/50] gnu: r-tximport: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 34/50] gnu: r-protgenerics: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 37/50] gnu: r-seqlogo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 38/50] gnu: r-zlibbioc: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 29/50] gnu: r-affyio: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 41/50] gnu: r-rcas: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 42/50] gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 44/50] gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 48/50] gnu: r-copyhelper: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 46/50] gnu: r-rhdf5: Move to (gnu packages bioconductor)., zimoun, 2021/05/21