03/14: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 40a650571155933794523279adc435fd7d84fd2a
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Mar 6 21:19:21 2019 +0100

    gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages 
bioconductor).
    
    * gnu/packages/bioinformatics.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
    Move from here...
    * gnu/packages/bioconductor.scm (r-bsgenome-hsapiens-1000genomes-hs37d5):
    ...to here.
---
 gnu/packages/bioconductor.scm   | 31 +++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 31 -------------------------------
 2 files changed, 31 insertions(+), 31 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 316be1c..c1c987e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -100,6 +100,37 @@ RepeatMasker (RM mask), and (4) the mask of repeats from 
Tandem Repeats
 Finder (TRF mask).  Only the AGAPS and AMB masks are \"active\" by default.")
     (license license:artistic2.0)))
 
+(define-public r-bsgenome-hsapiens-1000genomes-hs37d5
+  (package
+    (name "r-bsgenome-hsapiens-1000genomes-hs37d5")
+    (version "0.99.1")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/";
+                                  "release/data/annotation/src/contrib/"
+                                  "BSgenome.Hsapiens.1000genomes.hs37d5_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"))))
+    (properties
+     `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5")))
+    (build-system r-build-system)
+    ;; As this package provides little more than a very large data file it
+    ;; doesn't make sense to build substitutes.
+    (arguments `(#:substitutable? #f))
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)))
+    (home-page
+     
"https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/";)
+    (synopsis "Full genome sequences for Homo sapiens")
+    (description
+     "This package provides full genome sequences for Homo sapiens from
+1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.")
+    (license license:artistic2.0)))
+
 (define-public r-bsgenome-hsapiens-ucsc-hg19-masked
   (package
     (name "r-bsgenome-hsapiens-ucsc-hg19-masked")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 82f45b3..1e0abb3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7859,37 +7859,6 @@ dependencies between GO terms can be implemented and 
applied.")
 genome data packages and support for efficient SNP representation.")
     (license license:artistic2.0)))
 
-(define-public r-bsgenome-hsapiens-1000genomes-hs37d5
-  (package
-    (name "r-bsgenome-hsapiens-1000genomes-hs37d5")
-    (version "0.99.1")
-    (source (origin
-              (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://www.bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib/"
-                                  "BSgenome.Hsapiens.1000genomes.hs37d5_"
-                                  version ".tar.gz"))
-              (sha256
-               (base32
-                "1cg0g5fqmsvwyw2p9hp2yy4ilk21jkbbrnpgqvb5c36ihjwvc7sr"))))
-    (properties
-     `((upstream-name . "BSgenome.Hsapiens.1000genomes.hs37d5")))
-    (build-system r-build-system)
-    ;; As this package provides little more than a very large data file it
-    ;; doesn't make sense to build substitutes.
-    (arguments `(#:substitutable? #f))
-    (propagated-inputs
-     `(("r-bsgenome" ,r-bsgenome)))
-    (home-page
-     
"https://www.bioconductor.org/packages/BSgenome.Hsapiens.1000genomes.hs37d5/";)
-    (synopsis "Full genome sequences for Homo sapiens")
-    (description
-     "This package provides full genome sequences for Homo sapiens from
-1000genomes phase2 reference genome sequence (hs37d5), based on NCBI GRCh37.")
-    (license license:artistic2.0)))
-
 (define-public r-impute
   (package
     (name "r-impute")