10/14: gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 7bc5d1b0e1f1265028f221a51d7ee1c526132f65
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Mar 6 21:33:17 2019 +0100

    gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages 
bioconductor).
    
    * gnu/packages/bioinformatics.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
    Move from here...
    * gnu/packages/bioconductor.scm (r-txdb-mmusculus-ucsc-mm10-knowngene):
    ...to here.
---
 gnu/packages/bioconductor.scm   | 35 +++++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 35 -----------------------------------
 2 files changed, 35 insertions(+), 35 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1bb1871..a4e436e 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -507,6 +507,41 @@ is derived from the UCSC mm9 genome and based on the 
\"knownGene\" track.  The
 database is exposed as a @code{TxDb} object.")
     (license license:artistic2.0)))
 
+(define-public r-txdb-mmusculus-ucsc-mm10-knowngene
+  (package
+    (name "r-txdb-mmusculus-ucsc-mm10-knowngene")
+    (version "3.4.4")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/";
+                                  "release/data/annotation/src/contrib/"
+                                  "TxDb.Mmusculus.UCSC.mm10.knownGene_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"))))
+    (properties
+     `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene")))
+    (build-system r-build-system)
+    ;; As this package provides little more than a very large data file it
+    ;; doesn't make sense to build substitutes.
+    (arguments `(#:substitutable? #f))
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)
+       ("r-genomicfeatures" ,r-genomicfeatures)
+       ("r-annotationdbi" ,r-annotationdbi)))
+    (home-page
+     "https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/";)
+    (synopsis "Annotation package for TxDb knownGene object(s) for Mouse")
+    (description
+     "This package loads a TxDb object, which is an R interface to
+prefabricated databases contained in this package.  This package provides
+the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
+based on the knownGene track.")
+    (license license:artistic2.0)))
+
 
 (define-public r-biocgenerics
   (package
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d45dedb..b9973ba 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8105,41 +8105,6 @@ plots the corresponding sequence logo as introduced by 
Schneider and
 Stephens (1990).")
     (license license:lgpl2.0+)))
 
-(define-public r-txdb-mmusculus-ucsc-mm10-knowngene
-  (package
-    (name "r-txdb-mmusculus-ucsc-mm10-knowngene")
-    (version "3.4.4")
-    (source (origin
-              (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://www.bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib/"
-                                  "TxDb.Mmusculus.UCSC.mm10.knownGene_"
-                                  version ".tar.gz"))
-              (sha256
-               (base32
-                "01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"))))
-    (properties
-     `((upstream-name . "TxDb.Mmusculus.UCSC.mm10.knownGene")))
-    (build-system r-build-system)
-    ;; As this package provides little more than a very large data file it
-    ;; doesn't make sense to build substitutes.
-    (arguments `(#:substitutable? #f))
-    (propagated-inputs
-     `(("r-bsgenome" ,r-bsgenome)
-       ("r-genomicfeatures" ,r-genomicfeatures)
-       ("r-annotationdbi" ,r-annotationdbi)))
-    (home-page
-     "https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/";)
-    (synopsis "Annotation package for TxDb knownGene object(s) for Mouse")
-    (description
-     "This package loads a TxDb object, which is an R interface to
-prefabricated databases contained in this package.  This package provides
-the TxDb object of Mouse data as provided by UCSC (mm10, December 2011)
-based on the knownGene track.")
-    (license license:artistic2.0)))
-
 (define-public r-motifrg
   (package
     (name "r-motifrg")