|From:||José Víctor Moreno Mayar|
|Subject:||Re: [Bammds-users] ASD file error|
|Date:||Sun, 7 Sep 2014 16:16:44 +0200|
Cheers,Any idea why this might be the case?Thanks OleIt turned out to be some weird access issue, I think. When getting the error message I was running bammds on watt, whereas it worked fine on eos.
Morten--On Sun, Sep 7, 2014 at 12:54 PM, Ole Tange <address@hidden> wrote:On Sun, Sep 7, 2014 at 1:56 AM, Morten Allentoft
> Hi guys
> I'm getting an annoying error message that you perhaps can help me with?
> When I go:
> bammds MA840_L1_S2_trim15_PMDS_filter3.bam
> I get this:
> Error unlinking file tmp/EFD6SGwO2i using unlink0 at
> /usr/local/bin/bammds_parallel line 5150.
This should never happen.
It has most likely nothing to do with your data, but may have
something to do with your Linux environment.
and that works.
So that leads me to believe that the filesystem on
/home/meallentoft/data/Skhul/mapped_15bp is teasing you. If I look
right now, I see no 'tmp' dir there - and that is definitely bad, as
bammds creates that and uses that intensively. When finished
/home/meallentoft/data/Skhul/mapped_15bp/tmp should contain the same
Can you do this by hand:
and run it again? Do you get the same error?
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