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Re: [Myexperiment-discuss] i need some workflows :-)


From: Carole Goble
Subject: Re: [Myexperiment-discuss] i need some workflows :-)
Date: Thu, 05 Apr 2007 23:28:35 +0100
User-agent: Thunderbird 1.5.0.10 (Windows/20070221)

Jeremy

Do you think we should have URIs that is calculated from the workflow like the INChI is from the molecular structure?
no

Carole

This would be idea but will need some interesting fundamental work to show how representations of workflows can be shown to be the same workflow etc
Jeremy


On 5 Apr 2007, at 22:23, David De Roure wrote:

BTW These are the ones I'm using now, which I found with google. I guess what I'm looking for is a reference set we can all use for test purposes.

http://www.chembiogrid.org/projects/proj_workflows.html
http://biomoby.open-bio.org/CVS_CONTENT/moby-live/Java/docs/taverna/guide/workflows.html
http://bioinfo.mpiz-koeln.mpg.de/araws/workflows
http://mips.gsf.de/projects/plants/PlaNetPortal/taverna_workflows.html

This has also got me thinking about what workflows should look like to be indexed usefully by google - and what the IDs should look like. For example, in chemistry the inchi's are very google-friendly. A standard way of identifying a workflow that works for google would be handy.

-- Dave

On Thu, 5 Apr 2007, David De Roure wrote:

Sorry this is a silly question but could someone send me and Don some workflows or point us at some?! :-)

What we need is just an assortment of real workflows (in XML), captured in the wild, so we can play with them. I'm sure some of you have them roaming around your desks! Is there a zoo?!

It's just for testing our OAI thingie (must think of a name for it!)

This is something else for the wiki when we have it!

Thanks

-- Dave



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Jeremy Frey
School of Chemistry
University of Southampton
Southampton
SO17 1BJ
UK

Tel: +44(0) 23 8059 3209
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