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11/16: gnu: Add r-bioconcotk.
From: |
guix-commits |
Subject: |
11/16: gnu: Add r-bioconcotk. |
Date: |
Wed, 18 Dec 2019 09:33:43 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit c2b36a044140a2f1a186b85002e5c8ed98163a25
Author: Ricardo Wurmus <address@hidden>
Date: Wed Dec 18 15:25:17 2019 +0100
gnu: Add r-bioconcotk.
* gnu/packages/bioconductor.scm (r-bioconcotk): New variable.
---
gnu/packages/bioconductor.scm | 43 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 43 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6590f6e..2bc453d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7204,3 +7204,46 @@ Bioconductor user experience by extending concepts from
classes for individual assays, and allowing subsetting by genomic ranges or
rownames.")
(license license:artistic2.0)))
+
+(define-public r-bioconcotk
+ (package
+ (name "r-bioconcotk")
+ (version "1.6.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BiocOncoTK" version))
+ (sha256
+ (base32
+ "0rnah6c01a33yb9663jim9iclan61rpcwprb56mykgn1pf5hywbj"))))
+ (properties `((upstream-name . "BiocOncoTK")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bigrquery" ,r-bigrquery)
+ ("r-car" ,r-car)
+ ("r-complexheatmap" ,r-complexheatmap)
+ ("r-curatedtcgadata" ,r-curatedtcgadata)
+ ("r-dbi" ,r-dbi)
+ ("r-dplyr" ,r-dplyr)
+ ("r-dt" ,r-dt)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-ggpubr" ,r-ggpubr)
+ ("r-graph" ,r-graph)
+ ("r-httr" ,r-httr)
+ ("r-iranges" ,r-iranges)
+ ("r-magrittr" ,r-magrittr)
+ ("r-plyr" ,r-plyr)
+ ("r-rgraphviz" ,r-rgraphviz)
+ ("r-rjson" ,r-rjson)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scales" ,r-scales)
+ ("r-shiny" ,r-shiny)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)))
+ (home-page "https://bioconductor.org/packages/BiocOncoTK")
+ (synopsis "Bioconductor components for general cancer genomics")
+ (description
+ "The purpose of this package is to provide a central interface to various
+tools for genome-scale analysis of cancer studies.")
+ (license license:artistic2.0)))
- 01/16: gnu: Add r-reactome-db., (continued)
- 01/16: gnu: Add r-reactome-db., guix-commits, 2019/12/18
- 02/16: gnu: Add r-curatedtcgadata., guix-commits, 2019/12/18
- 04/16: gnu: Add r-graphite., guix-commits, 2019/12/18
- 05/16: gnu: Add r-reactomepa., guix-commits, 2019/12/18
- 03/16: gnu: Add r-influencer., guix-commits, 2019/12/18
- 06/16: gnu: Add r-ebarrays., guix-commits, 2019/12/18
- 07/16: gnu: Add r-bioccasestudies., guix-commits, 2019/12/18
- 09/16: gnu: Add r-experimenthub., guix-commits, 2019/12/18
- 12/16: gnu: Add r-biocor., guix-commits, 2019/12/18
- 08/16: gnu: Add r-biocgraph., guix-commits, 2019/12/18
- 11/16: gnu: Add r-bioconcotk.,
guix-commits <=
- 13/16: gnu: Add r-biocpkgtools., guix-commits, 2019/12/18
- 14/16: gnu: Add r-biocset., guix-commits, 2019/12/18
- 10/16: gnu: Add r-multiassayexperiment., guix-commits, 2019/12/18
- 15/16: gnu: Add r-biocworkflowtools., guix-commits, 2019/12/18
- 16/16: gnu: Add r-biodist., guix-commits, 2019/12/18