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12/16: gnu: Add r-biocor.
From: |
guix-commits |
Subject: |
12/16: gnu: Add r-biocor. |
Date: |
Wed, 18 Dec 2019 09:33:44 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 4d12c1e335e3949c451b045a1f128200432fdde9
Author: Ricardo Wurmus <address@hidden>
Date: Wed Dec 18 15:25:23 2019 +0100
gnu: Add r-biocor.
* gnu/packages/bioconductor.scm (r-biocor): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 2bc453d..62ec803 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -7247,3 +7247,30 @@ rownames.")
"The purpose of this package is to provide a central interface to various
tools for genome-scale analysis of cancer studies.")
(license license:artistic2.0)))
+
+(define-public r-biocor
+ (package
+ (name "r-biocor")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "BioCor" version))
+ (sha256
+ (base32
+ "1bjw02rwmz2d715sgpfp08njb15200ch7cmipsf9hd5835ppg1jl"))))
+ (properties `((upstream-name . "BioCor")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocparallel" ,r-biocparallel)
+ ("r-gseabase" ,r-gseabase)
+ ("r-matrix" ,r-matrix)))
+ (home-page "https://llrs.github.io/BioCor/")
+ (synopsis "Functional similarities")
+ (description
+ "This package provides tools to calculate functional similarities based
+on the pathways described on KEGG and REACTOME or in gene sets. These
+similarities can be calculated for pathways or gene sets, genes, or clusters
+and combined with other similarities. They can be used to improve networks,
+gene selection, testing relationships, and so on.")
+ (license license:expat)))
- branch master updated (7e9d6f0 -> 77e2de3), guix-commits, 2019/12/18
- 01/16: gnu: Add r-reactome-db., guix-commits, 2019/12/18
- 02/16: gnu: Add r-curatedtcgadata., guix-commits, 2019/12/18
- 04/16: gnu: Add r-graphite., guix-commits, 2019/12/18
- 05/16: gnu: Add r-reactomepa., guix-commits, 2019/12/18
- 03/16: gnu: Add r-influencer., guix-commits, 2019/12/18
- 06/16: gnu: Add r-ebarrays., guix-commits, 2019/12/18
- 07/16: gnu: Add r-bioccasestudies., guix-commits, 2019/12/18
- 09/16: gnu: Add r-experimenthub., guix-commits, 2019/12/18
- 12/16: gnu: Add r-biocor.,
guix-commits <=
- 08/16: gnu: Add r-biocgraph., guix-commits, 2019/12/18
- 11/16: gnu: Add r-bioconcotk., guix-commits, 2019/12/18
- 13/16: gnu: Add r-biocpkgtools., guix-commits, 2019/12/18
- 14/16: gnu: Add r-biocset., guix-commits, 2019/12/18
- 10/16: gnu: Add r-multiassayexperiment., guix-commits, 2019/12/18
- 15/16: gnu: Add r-biocworkflowtools., guix-commits, 2019/12/18
- 16/16: gnu: Add r-biodist., guix-commits, 2019/12/18