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10/21: gnu: Add r-affycoretools.
From: |
guix-commits |
Subject: |
10/21: gnu: Add r-affycoretools. |
Date: |
Sun, 15 Sep 2019 17:02:27 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 12105c6c3a900ba35533c15c71d59acf151b5627
Author: Ricardo Wurmus <address@hidden>
Date: Sun Sep 15 20:57:32 2019 +0200
gnu: Add r-affycoretools.
* gnu/packages/bioconductor.scm (r-affycoretools): New variable.
---
gnu/packages/bioconductor.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index be9f757..df50fbc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1077,6 +1077,45 @@ This package provides some simple approaches to in
silico creation of quality
problems in CEL-level data to help evaluate performance of quality metrics.")
(license license:artistic2.0)))
+(define-public r-affycoretools
+ (package
+ (name "r-affycoretools")
+ (version "1.56.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "affycoretools" version))
+ (sha256
+ (base32
+ "17dxpzhwwdwnxkdpmyjwdnacg41hw60mlc71w4nzlvs28sfsy09s"))))
+ (properties `((upstream-name . "affycoretools")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-affy" ,r-affy)
+ ("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-dbi" ,r-dbi)
+ ("r-edger" ,r-edger)
+ ("r-gcrma" ,r-gcrma)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gostats" ,r-gostats)
+ ("r-gplots" ,r-gplots)
+ ("r-hwriter" ,r-hwriter)
+ ("r-lattice" ,r-lattice)
+ ("r-limma" ,r-limma)
+ ("r-oligoclasses" ,r-oligoclasses)
+ ("r-reportingtools" ,r-reportingtools)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xtable" ,r-xtable)))
+ (home-page "https://bioconductor.org/packages/affycoretools/")
+ (synopsis "Functions for analyses with Affymetrix GeneChips")
+ (description
+ "This package provides various wrapper functions that have been written
+to streamline the more common analyses that a Biostatistician might see.")
+ (license license:artistic2.0)))
+
(define-public r-annotate
(package
(name "r-annotate")
- 06/21: gnu: Add r-affycontam., (continued)
- 06/21: gnu: Add r-affycontam., guix-commits, 2019/09/15
- 07/21: gnu: Add r-pfam-db., guix-commits, 2019/09/15
- 13/21: gnu: Add js-requirejs., guix-commits, 2019/09/15
- 18/21: gnu: Add r-oligo., guix-commits, 2019/09/15
- 19/21: gnu: Add r-genomegraphs., guix-commits, 2019/09/15
- 21/21: gnu: Add r-variancepartition., guix-commits, 2019/09/15
- 12/21: gnu: Add r-reqon., guix-commits, 2019/09/15
- 14/21: gnu: Add r-shinytree., guix-commits, 2019/09/15
- 11/21: gnu: Add r-seqbias., guix-commits, 2019/09/15
- 15/21: gnu: Add r-shinythemes., guix-commits, 2019/09/15
- 10/21: gnu: Add r-affycoretools.,
guix-commits <=
- 09/21: gnu: Add r-oligoclasses., guix-commits, 2019/09/15
- 17/21: gnu: Add r-affxparser., guix-commits, 2019/09/15
- 16/21: gnu: Add r-variantfiltering., guix-commits, 2019/09/15
- 20/21: gnu: Add r-wavetiling., guix-commits, 2019/09/15