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12/21: gnu: Add r-reqon.
From: |
guix-commits |
Subject: |
12/21: gnu: Add r-reqon. |
Date: |
Sun, 15 Sep 2019 17:02:28 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit bb0024dc697c2a4c6f91b59b893e913b02d38e94
Author: Ricardo Wurmus <address@hidden>
Date: Sun Sep 15 21:04:00 2019 +0200
gnu: Add r-reqon.
* gnu/packages/bioconductor.scm (r-reqon): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ce43bfe..9fce21d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5729,6 +5729,31 @@ and parameters of which are trained on a set of aligned
reads and a reference
genome sequence.")
(license license:lgpl3)))
+(define-public r-reqon
+ (package
+ (name "r-reqon")
+ (version "1.30.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ReQON" version))
+ (sha256
+ (base32
+ "04bljr8vgb9z9800d9v8w7a4rvjkwq48zd8n5divq30zj9k2na7a"))))
+ (properties `((upstream-name . "ReQON")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-rjava" ,r-rjava)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-seqbias" ,r-seqbias)))
+ (home-page "https://bioconductor.org/packages/ReQON/")
+ (synopsis "Recalibrating quality of nucleotides")
+ (description
+ "This package provides an implementation of an algorithm for
+recalibrating the base quality scores for aligned sequencing data in BAM
+format.")
+ (license license:gpl2)))
+
(define-public r-wavcluster
(package
(name "r-wavcluster")
- 02/21: gnu: Add r-timeseriesexperiment., (continued)
- 02/21: gnu: Add r-timeseriesexperiment., guix-commits, 2019/09/15
- 01/21: gnu: Add r-wavcluster., guix-commits, 2019/09/15
- 05/21: gnu: Add r-affycompatible., guix-commits, 2019/09/15
- 08/21: gnu: Add r-reportingtools., guix-commits, 2019/09/15
- 06/21: gnu: Add r-affycontam., guix-commits, 2019/09/15
- 07/21: gnu: Add r-pfam-db., guix-commits, 2019/09/15
- 13/21: gnu: Add js-requirejs., guix-commits, 2019/09/15
- 18/21: gnu: Add r-oligo., guix-commits, 2019/09/15
- 19/21: gnu: Add r-genomegraphs., guix-commits, 2019/09/15
- 21/21: gnu: Add r-variancepartition., guix-commits, 2019/09/15
- 12/21: gnu: Add r-reqon.,
guix-commits <=
- 14/21: gnu: Add r-shinytree., guix-commits, 2019/09/15
- 11/21: gnu: Add r-seqbias., guix-commits, 2019/09/15
- 15/21: gnu: Add r-shinythemes., guix-commits, 2019/09/15
- 10/21: gnu: Add r-affycoretools., guix-commits, 2019/09/15
- 09/21: gnu: Add r-oligoclasses., guix-commits, 2019/09/15
- 17/21: gnu: Add r-affxparser., guix-commits, 2019/09/15
- 16/21: gnu: Add r-variantfiltering., guix-commits, 2019/09/15
- 20/21: gnu: Add r-wavetiling., guix-commits, 2019/09/15