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03/05: gnu: Add python2-biopython-1.66.
From: |
Ben Woodcroft |
Subject: |
03/05: gnu: Add python2-biopython-1.66. |
Date: |
Mon, 19 Sep 2016 07:06:16 +0000 (UTC) |
benwoodcroft pushed a commit to branch master
in repository guix.
commit 4b1a15282677b15a5949ec144567529f70260203
Author: Ben Woodcroft <address@hidden>
Date: Mon Sep 19 12:15:07 2016 +1000
gnu: Add python2-biopython-1.66.
* gnu/packages/bioinformatics.scm (python2-biopython-1.66): New variable.
---
gnu/packages/bioinformatics.scm | 14 ++++++++++++++
1 file changed, 14 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index a8d2cf3..5effc80 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -630,6 +630,20 @@ into separate processes; and more.")
(native-inputs `(("python2-setuptools" ,python2-setuptools)
,@(package-native-inputs base))))))
+;; An outdated version of biopython is required for seqmagick, see
+;; https://github.com/fhcrc/seqmagick/issues/59
+;; When that issue has been resolved this package should be removed.
+(define python2-biopython-1.66
+ (package
+ (inherit python2-biopython)
+ (version "1.66")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "biopython" version))
+ (sha256
+ (base32
+ "1gdv92593klimg22icf5j9by7xiq86jnwzkpz4abaa05ylkdf6hp"))))))
+
(define-public bpp-core
;; The last release was in 2014 and the recommended way to install from
source
;; is to clone the git repository, so we do this.