I seem to be having trouble with the lennard jones force capping. Basically the line "inter forcecap $cap" causes my simulation to hang and never finish. I attached my simplified script with that command issued on line 111: the simulation does finish with this line commented out. I've tried different syntax for the capping which changed slightly in the newer version of espresso (I'm now using Espresso 3.3.1) I hope I'm just overlooking something simple. Any help would be appreciated. Thanks Nick
Nicholas Kinney
PhD. Genetics, Bioinformatics, and Computational Biology
Post-Doctoral Researcher, Edward Via College of Osteopathic Medicine