bug#36797: closed ([PATCH 08/11] gnu: Add r-flowpeaks.)

[GNU bug Tracking System]

Your message dated Fri, 21 Feb 2020 18:07:33 +0100
with message-id <CAJ3okZ2GnkOKAPNwz8FwmRbZ+W+pYHiwB=address@hidden>
and subject line patches merged
has caused the debbugs.gnu.org bug report #36797,
regarding [PATCH 08/11] gnu: Add r-flowpeaks.
to be marked as done.

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-- 
36797: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 08/11] gnu: Add r-flowpeaks.
>
>
>
>
> Date: 
>
> Wed, 24 Jul 2019 20:22:01 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-flowpeaks): New variable.
> ---
>  gnu/packages/bioconductor.scm | 23 +++++++++++++++++++++++
>  1 file changed, 23 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 0f023665c2..ab4d9f4075 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -4907,3 +4907,26 @@ and to both short and long sequence reads.")
>      (description
>        "Identifies cell populations in Flow Cytometry data using non-parametric 
> clustering and segmented-regression-based change point detection.  Note: R 
> 2.11.0 or newer is required.")
>      (license license:artistic2.0)))
> +
> +(define-public r-flowpeaks
> +  (package
> +    (name "r-flowpeaks")
> +    (version "1.30.0")
> +    (source
> +      (origin
> +        (method url-fetch)
> +        (uri (bioconductor-uri "flowPeaks" version))
> +        (sha256
> +          (base32
> +            "1ncz7n6n39svi444yy29ip53398392s3m6z0h2a77rhcnzg456wy"))))
> +    (properties `((upstream-name . "flowPeaks")))
> +    (build-system r-build-system)
> +    (inputs `(("gsl" ,gsl)))
> +    (home-page
> +      "https://bioconductor.org/packages/flowPeaks";)
> +    (synopsis
> +      "An R package for flow data clustering")
> +    (description
> +      "This package provides a fast and automatic clustering to classify the 
> cells into subpopulations based on finding the peaks from the overall density 
> function generated by K-means.")
> +    (license license:artistic2.0)))     ;TODO: artistic1.0 does not exist
> +
> -- 
> 2.21.0
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> patches merged
>
>
>
>
> Date: 
>
> Fri, 21 Feb 2020 18:07:33 +0100
>
>
>
>
> Dear,
>
> All the patches are merged now; except r-flowpeaks. Because this
> package use Artistic1.0 which is not enough clear to be considered
> "free" [1,2] (GNU's point of view [3]) and upstream are not
> responsive, let clean the bug tracker. :-)
>
> [1] https://debbugs.gnu.org/cgi/bugreport.cgi?bug=36797#16
> [2] https://lists.gnu.org/archive/html/guix-devel/2019-12/msg00286.html
> [3] https://www.gnu.org/licenses/license-list.en.html#ArtisticLicense
>
> All the best,
> simon
>
>
> --- End Message ---