Re: [Swarm-Support] Swarm and opteron machines II

[Paul Johnson]

OK, I'm just guessing in the dark, but I can see some obvious things to 
fix before we get too excited.

Note that you never tell exactly which gcc version you are using.

David Camacho Trujillo wrote:
> Many thanks for your response,
>
> Here are some answers to your questions:
>
> We have installed :
> Blt-2.4.2-205.src.rpm
> Blt2.4-patch 1
> Blt2.4-patch 2 (see below)
>
> Hdf55-1.6.2
> Jdk 1.4.2-08
>
> Here is what my colleague has write about the blt library:
>
> building blt2.4z
> for the opteron there is a bug and it is nessesary to patch the source code
>
> go to the blt directory
>
> patch -p0 < ../blt2.4z.patch
>
> ./configure --prefix=/usr/local/blt --with-tcl=/usr/lib64/

I can't verify this because your blt build is not complete--no make, 
make install.  I would suggest you make it easier on yourself and take 
the src.rpm file and run "rpmbuild --rebuild blt**src.rpm" and let the 
system do its magic, and then install that rpm.

> go to swarm directory
>
> data/src/swarm-2.2 # ./configure --with-tclscriptdir=/usr/lib64/tcl8.4
> --with-tkscriptdir=/usr/lib64/tk8.4 --with-bltdir=/usr/local/blt
> --with-jdkdir=/usr/lib/jvm/java
We do not recommend doing it this way.  Check the SwarmFaq where it 
explains about NOT building in the source directory itself. 
http://www.ku.edu/~pauljohn/SwarmFaq/SwarmOnlineFaq.html#2.4  It looks 
to me as though your jdkdir is incorrect, if you installed the rpm for 
j2sdk. You probably also need --prefix= and --with-defaultdir=.  I 
notice below that you installed hdf5 someplace off to the side, in /data 
or some such, and if you do that, swarm won't find it.


If all else fails, try to build --without-jdkdir to see if the problem 
is just in the objective C side.

You might take this swarm src.rpm I built on suse9.3

http://lark.cc.ku.edu/~pauljohn/Swarm/Swarm-2.2X_Suse9.3/swarm-2.2-5_suse93.src.rpm

Install that, and then go to your SPEC directory and look through the 
spec dir, see where the configure line is, fix the jdk directory.

After that, you could build the new rpm from that spec file.

> rpmbuild -ba swarm-2.2.spec



> gcc-objc has to be installed
> gperf has to be installed
>
> ake[2]: Leaving directory `/data/src/hdf5-1.6.2/examples'
> make[1]: Leaving directory `/data/src/hdf5-1.6.2'
> PATH="$PATH:/sbin" ldconfig -n /data/src/hdf5-1.6.2/hdf5/lib
> ----------------------------------------------------------------------
> Libraries have been installed in:
>    /data/src/hdf5-1.6.2/hdf5/lib
>
> If you ever happen to want to link against installed libraries
> in a given directory, LIBDIR, you must either use libtool, and
> specify the full pathname of the library, or use the `-LLIBDIR'
> flag during linking and do at least one of the following:
>    - add LIBDIR to the `LD_LIBRARY_PATH' environment variable
>      during execution
>    - add LIBDIR to the `LD_RUN_PATH' environment variable
>      during linking
>    - use the `-Wl,--rpath -Wl,LIBDIR' linker flag
>    - have your system administrator add LIBDIR to `/etc/ld.so.conf'
>
> See any operating system documentation about shared libraries for
> more information, such as the ld(1) and ld.so(8) manual pages.
>
>
>
>
>
>
>
>
> Also, here is a longer info about the exit status from the installation:
>
> bs && rm -f libswarm.so.0 && ln -s libswarm.so.0.0.0
> libswarm.so.0)
> (cd .libs && rm -f libswarm.so && ln -s libswarm.so.0.0.0
> libswarm.so)
> ar cru .libs/libswarm.a  SwarmEnvironment.o classList.o
> ranlib .libs/libswarm.a
> creating libswarm.la
> (cd .libs && rm -f libswarm.la && ln -s ../libswarm.la
> libswarm.la)
> make[4]: Leaving directory `/data/src/swarm-2.2/src'
> make[3]: Leaving directory `/data/src/swarm-2.2/src'
> make[2]: Leaving directory `/data/src/swarm-2.2/src'
> Making all in tools
> make[2]: Entering directory `/data/src/swarm-2.2/tools'
> if /bin/sh ../libtool --mode=compile gcc -DHAVE_CONFIG_H -I. -I. -I.. -I..
> -I../libobjc -I../libobjc -I../src -I../src -I../src/collections -
> I../src/defobj
> -I../src/activity -I../src/objectbase -I../src/random -I../src/simtools
> -I../src/gui -I../src/simtoolsgui -I../src/misc -I.  -DDLL_EXPORT -
> D_GNU_SOURCE 
> -g -O2 -fgnu-runtime -fno-strict-aliasing -Wall -Wno-import -Wno-protocol
> -Wno-long-long -MT findImp.lo -MD -MP -MF ".deps/findImp.Tpo" -c -o
> findImp.lo findImp.m; \
> then mv -f ".deps/findImp.Tpo" ".deps/findImp.Plo"; else rm
> -f ".deps/findImp.Tpo"; exit 1; fi
> mkdir .libs
>  gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I../libobjc -I../libobjc -I../src
> -I../src -I../src/collections -I../src/defobj -I../src/activity
> -I../src/objectbase -I../src/random -I../src/simtools -I../src/gui
> -I../src/simtoolsgui -I../src/misc -I. -DDLL_EXPORT -D_GNU_SOURCE -g -O2
> -fgnu-runtime -fno-strict-aliasing -Wall -Wno-import -Wno-protocol
> -Wno-long-long -MT findImp.lo -MD -MP -MF .deps/findImp.Tpo -c findImp.m  -fPIC
> -DPIC -o .libs/findImp.o
> findImp.m: In function `main':
> findImp.m:45: warning: implicit declaration of function 
> `swarm_force_references'
>  gcc -DHAVE_CONFIG_H -I. -I. -I.. -I.. -I../libobjc -I../libobjc -I../src
> -I../src -I../src/collections -I../src/defobj -I../src/activity
> -I../src/objectbase -I../src/random -I../src/simtools -I../src/gui
> -I../src/simtoolsgui -I../src/misc -I. -DDLL_EXPORT -D_GNU_SOURCE -g -O2
> -fgnu-runtime -fno-strict-aliasing -Wall -Wno-import -Wno-protocol
> -Wno-long-long -MT findImp.lo -MD -MP -MF .deps/findImp.Tpo -c findImp.m -o
> findImp.o >/dev/null 2>&1
> /bin/sh ../libtool --mode=link gcc  -g -O2 -fgnu-runtime -fno-strict-aliasing
> -Wall -Wno-import -Wno-protocol -Wno-long-long   -o findImp -L../src
> -L../libobjc  findImp.lo -lswarm
> gcc -g -O2 -fgnu-runtime -fno-strict-aliasing -Wall -Wno-import -Wno-protocol
> -Wno-long-long -o .libs/findImp .libs/findImp.o  -L/data/src/swarm-2.2/src
> -L/data/src/swarm-2.2/libobjc /data/src/swarm-2.2/src/.libs/libswarm.so
> -L/data/src/swarm-2.2/src/space -L/data/src/swarm-2.2/src/analysis
> -L/data/src/swarm-2.2/src/simtoolsgui -L/data/src/swarm-2.2/src/simtools
> -L/data/src/swarm-2.2/src/random -L/data/src/swarm-2.2/src/tkobjc
> -L/data/src/swarm-2.2/src/tclobjc -L/data/src/swarm-2.2/src/objectbase
> -L/data/src/swarm-2.2/src/activity -L/data/src/swarm-2.2/src/defobj
> -L/data/src/swarm-2.2/src/collections -L/data/src/swarm-2.2/src/misc
> -L/usr/X11R6/lib64 /data/src/swarm-2.2/src/space/.libs/libspace.so
> /data/src/swarm-2.2/src/analysis/.libs/libanalysis.so
> /data/src/swarm-2.2/src/simtoolsgui/.libs/libsimtoolsgui.so
> /data/src/swarm-2.2/src/simtools/.libs/libsimtools.so
> /data/src/swarm-2.2/src/random/.libs/librandom.so
> /data/src/swarm-2.2/src/tkobjc/.libs/libtkobjc.so /data/src/swarm!
>  -2.2/src/tclobjc/.libs/libtclobjc.so
> /data/src/swarm-2.2/src/objectbase/.libs/libobjectbase.so
> /data/src/swarm-2.2/src/activity/.libs/libactivity.so
> /data/src/swarm-2.2/src/defobj/.libs/libdefobj.so
> /data/src/swarm-2.2/src/collections/.libs/libcollections.so
> /data/src/swarm-2.2/src/misc/.libs/libmisc.so
> /data/src/swarm-2.2/libobjc/.libs/libswarmobjc.so -lBLT24 -ltk8.4 -ltcl8.4 -
> lXpm
> -lz -lX11 -lm -ldl
> /data/src/swarm-2.2/src/.libs/libswarm.so: undefined reference to
> `swarm_lookup_module'
> collect2: ld returned 1 exit status
> make[2]: *** [findImp] Error 1
> make[2]: Leaving directory `/data/src/swarm-2.2/tools'
> make[1]: *** [all-recursive] Error 1
> make[1]: Leaving directory `/data/src/swarm-2.2'
> make: *** [all] Error 2
>
>
> Many thanks in advance,
> David Camacho
>
>
>
>
>
>
>
>
> _______________________________________________
> Support mailing list
> address@hidden
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--
Paul E. Johnson                       email: address@hidden
Dept. of Political Science            http://lark.cc.ku.edu/~pauljohn
1541 Lilac Lane, Rm 504
University of Kansas                  Office: (785) 864-9086
Lawrence, Kansas 66044-3177           FAX: (785) 864-5700