Re: [igraph] cohesive.blocks V0.5

[Gabor Csardi]

It works well with R 2.6.2 as well.

I've no idea what went wrong here. You'll really need to 
send us a complete example that goes wrong. Please only keep 
as much of your code, that is enough to reproduce the error,
e.g. don't send all the graphs. Something might be wrong with
that graph object. 

G.

On Tue, Feb 12, 2008 at 02:46:00PM -0500, Uri Shwed wrote:
> Hi Gabor and Peter,
> See what I get and some data below. I'm using R 2.6.2 on Scientific 
> Linux 4.5. I've just installed R today, and I'm a newby in both R and unix.
> Regarding bigger networks - If I have sufficient computing power, you 
> don't think this could work? Are you familiar with other packages that 
> could work better?
> I have access to a cluster of 9 machines, with a total of 82G memory on 
> them. My largest network is 12k nodes and 70k edges, but maybe I can 
> omit it. the second largest is 3k edges and 5k nodes. (these are 
> scientific citation networks).
> Thanks so much for all your work,
> Uri
> 
> 
> 
> 
> 
> Browse[1]> cohesive.blocks(cancer[[1965]][[3]])
> Error during wrapup: no applicable method for "as.double"
> Browse[1]> cancer[[1965]][[3]]
> Vertices: 289
> Edges: 50
> Directed: TRUE
> Edges:
> 
> [0]  223 -> 213
> [1]  225 -> 210
> [2]  226 ->  78
> [3]  227 -> 218
> [4]  229 -> 171
> [5]  229 -> 183
> [6]  229 -> 215
> [7]  230 -> 240
> [8]  231 ->  78
> [9]  231 -> 154
> [10] 236 -> 149
> [11] 236 ->  80
> [12] 239 -> 227
> [13] 242 -> 149
> [14] 242 -> 183
> [15] 243 -> 183
> [16] 243 -> 215
> [17] 243 ->  67
> [18] 243 -> 232
> [19] 244 ->  12
> [20] 244 -> 201
> [21] 244 -> 150
> [22] 244 ->  11
> [23] 244 ->  66
> [24] 246 -> 240
> [25] 246 -> 183
> [26] 249 -> 156
> [27] 249 -> 159
> [28] 254 -> 242
> [29] 254 ->  88
> [30] 254 -> 244
> [31] 255 -> 154
> [32] 255 -> 231
> [33] 256 ->  88
> [34] 260 -> 130
> [35] 260 -> 157
> [36] 264 -> 183
> [37] 266 ->  67
> [38] 266 -> 232
> [39] 266 -> 243
> [40] 273 ->  88
> [41] 275 -> 288
> [42] 277 -> 247
> [43] 277 -> 246
> [44] 279 ->  88
> [45] 279 -> 249
> [46] 281 -> 225
> [47] 287 -> 286
> [48] 287 -> 285
> [49] 288 ->  78
> 
> 
> Gabor Csardi wrote:
> 
> >Uri, i have just installed that version, it works fine. 
> >What is your platform? What exactly is the command you're 
> >trying to run? Can you send me a small network on which i 
> >can reproduce the problem?
> >
> >Gabor
> >
> >ps. i don't think you can run it on such a big network, except 
> >if your network is very special
> >
> >On Tue, Feb 12, 2008 at 01:27:18PM -0500, Uri Shwed wrote:
> > 
> >
> >>Hi Gabor and all,
> >>I need to get cohesive blocks for a networks >12k nodes...I understood 
> >>that I should get V0.5 for that, but it doesn't work for me...
> >>Anyone tried this already? Here's what I get:
> >>Error in UseMethod("as.double") : no applicable method for "as.double"
> >>It worked with v0.45 on some of my smaller networks, now those don't 
> >>work either.
> >>Any ideas?
> >>Thanks,
> >>Uri
> >>
> >>-- 
> >>Uri Shwed
> >>ISERP, Columbia University
> >>Room 805, 420 W 118th St.
> >>New York 10027 NY
> >>Tel: 212 854 9374
> >>
> >>
> >>
> >>_______________________________________________
> >>igraph-help mailing list
> >>address@hidden
> >>http://lists.nongnu.org/mailman/listinfo/igraph-help
> >>   
> >>
> >
> > 
> >
> 
> 
> -- 
> Uri Shwed
> ISERP, Columbia University
> Room 805, 420 W 118th St.
> New York 10027 NY
> Tel: 212 854 9374
> 
> 
> 
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-- 
Csardi Gabor <address@hidden>    UNIL DGM