Diff
Modified: branches/wf4ever/app/views/research_objects/_inputs.rhtml (3297 => 3298)
--- branches/wf4ever/app/views/research_objects/_inputs.rhtml 2013-01-15 12:04:58 UTC (rev 3297)
+++ branches/wf4ever/app/views/research_objects/_inputs.rhtml 2013-01-15 12:05:07 UTC (rev 3298)
@@ -2,8 +2,7 @@
<h2>Inputs</h2>
<table class="values">
<tr><th>Parameter</th> <th>Value</th></tr>
- <tr><td>database</td> <td><code>colouredanimals</code></td></tr>
- <tr><td>species</td> <td><code>elephant</code></td></tr>
- <tr><td>part</td> <td><code>trunk</code></td></tr>
+ <tr><td>SNP_ID</td> <td><code>P1337</code></td></tr>
+ <tr><td>set_width</td> <td><code>200</code></td></tr>
</table>
-</div>
\ No newline at end of file
+</div>
Modified: branches/wf4ever/app/views/research_objects/_outputs.rhtml (3297 => 3298)
--- branches/wf4ever/app/views/research_objects/_outputs.rhtml 2013-01-15 12:04:58 UTC (rev 3297)
+++ branches/wf4ever/app/views/research_objects/_outputs.rhtml 2013-01-15 12:05:07 UTC (rev 3298)
@@ -4,23 +4,23 @@
<tr><th>Parameter</th> <th>Value</th></tr>
<tr><td>name</td> <td><code>elmer</code></td></tr>
<tr><td>titles</td> <td>
- <pre>"Elmer", "1989"
-"Elmer Again", "1991"
-"Elmer on Stilts", "1993"
-"Elmer and Wilbur", "1994"
-"Elmer in the Snow", "1995"
-"The Elmer Pop-Up Book", "1996"
-"Elmer and the Wind", "1997"
-"Elmer Plays Hide and Seek", "1998"
-"Elmer and the Lost Teddy", "1999"
-"Elmer and the Stranger", "2000"</pre>
+ <pre>
+rs174547 DKFZP434K028 -1
+rs174547 DAGLA path:hsa04723 Retrograde end
+rs174547 C11orf9 -1
+rs174547 C11orf10 -1
+rs174547 FEN1 path:hsa03030 DNA replicati
+rs174547 FEN1 path:hsa03410 Base excisio
+rs174547 FEN1 path:hsa03450 Non-homologo
+rs174547 FADS2 path:hsa00592 alpha-Linolen
+rs174547 FADS2 path:hsa01040 Biosynthesis
<span class="more">153 more lines</span>
- <div><a href=''>View/download</a> (1.2 MiB" plain text</div>
+ <div><a href=''>View/download</a> (1.2 MiB) plain text</div>
</td></tr>
<tr><td>observation</td> <td>
-<a href="" title="Elmer The Patchwork Elephant by [Nocturne], on Flickr"><img src="" width="150" height="150" alt="Elmer The Patchwork Elephant"></a>
- <tr><td>features</td> <td><a href=''>Download</a> (147 MiB" Excel spreadsheet</td></tr>
+ <img src="" width="250"/></td>
+ <tr><td>features</td> <td><a href=''>Download</a> (147 MiB) Excel spreadsheet</td></tr>
</td></tr>
</table>
-</div>
\ No newline at end of file
+</div>
Modified: branches/wf4ever/app/views/research_objects/_rundescription.rhtml (3297 => 3298)
--- branches/wf4ever/app/views/research_objects/_rundescription.rhtml 2013-01-15 12:04:58 UTC (rev 3297)
+++ branches/wf4ever/app/views/research_objects/_rundescription.rhtml 2013-01-15 12:05:07 UTC (rev 3298)
@@ -1,11 +1,10 @@
<div class="annotation">
<h3 class="type">Description</h3>
<div class="body">
- This is a run of the Hello World workflow. As you see this produced some very interesting
- results, but this should be tested for consistency.
+The workflow maps a SNP (dbSNP id) to a gene (EntrezGene id).
</div>
<div class="provenance">
- <span class="authoredBy">Stian Soiland-Reyes</span> on
+ <span class="authoredBy">Kristina Hettne</span> on
<span class="authoredOn">2012-12-25 10:04</span>
</div>
</div>
Modified: branches/wf4ever/app/views/research_objects/_wf4evertools.rhtml (3297 => 3298)
--- branches/wf4ever/app/views/research_objects/_wf4evertools.rhtml 2013-01-15 12:04:58 UTC (rev 3297)
+++ branches/wf4ever/app/views/research_objects/_wf4evertools.rhtml 2013-01-15 12:05:07 UTC (rev 3298)
@@ -1,3 +1,8 @@
+<%
+# FIXME: MINIM should not be hard coded (here)
+minim = "http://sandbox.wf4ever-project.org/rodl/ROs/golden-exemplar-gk/checklist-runnable.rdf"
+
+%>
<div class="contribution_section_box">
<h3 class="heading">
Wf4Ever tools
@@ -4,6 +9,6 @@
</h3>
<ul class="wf4evertools links">
<li><%= render :partial => "research_objects/browseportal", :locals => { :contributable => @contributable } -%></li>
- <li><a href="" URI.escape @contributable.url -%>">Checklist</a></li>
+ <li><a href="" minim -%>&purpose=Runnable&RO=<%= @contributable.url -%>">Checklist</a></li>
</ul>
</div>
Modified: branches/wf4ever/app/views/research_objects/_workflow.rhtml (3297 => 3298)
--- branches/wf4ever/app/views/research_objects/_workflow.rhtml 2013-01-15 12:04:58 UTC (rev 3297)
+++ branches/wf4ever/app/views/research_objects/_workflow.rhtml 2013-01-15 12:05:07 UTC (rev 3298)
@@ -1,7 +1,7 @@
<div class="annotation">
<h3 class="type">Executed workflow</h3>
<div class="body">
- <div><a href="" world</a> by Stian Soiland-Reyes, Khalid Belhajjame</div>
- <img src="" />
+ <div><a href="" by Kristina Hettne, Harish Dharuri</div>
+ <img src="" height="300" />
</div>
</div>
Modified: branches/wf4ever/app/views/research_objects/show.rhtml (3297 => 3298)
--- branches/wf4ever/app/views/research_objects/show.rhtml 2013-01-15 12:04:58 UTC (rev 3297)
+++ branches/wf4ever/app/views/research_objects/show.rhtml 2013-01-15 12:05:07 UTC (rev 3298)
@@ -67,9 +67,7 @@
<%= render :partial => "research_objects/reviews", :locals => { :reviewable => @contributable } %>
</div>
- <div id="commentsBox">
- <%= render :partial => "research_objects/comments", :locals => { :commentable => @contributable } %>
- </div>
+ <%= render :partial => "research_objects/comments", :locals => { :commentable => @contributable } %>
</div>
Added: branches/wf4ever/public/images/mockup/jmol.png (0 => 3298)
--- branches/wf4ever/public/images/mockup/jmol.png (rev 0)
+++ branches/wf4ever/public/images/mockup/jmol.png 2013-01-15 12:05:07 UTC (rev 3298)
@@ -0,0 +1,376 @@
+\x89PNG
+
+
+IHDR \x95 \x95 6[l; bKGD \xFF \xFF \xFF\xA0\xBD\xA7\x93 pHYs \x9A\x9C tIME\xDD.5\xF9G<