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[bug#66966] [PATCH 04/13] gnu: Add r-basic4cseq.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#66966] [PATCH 04/13] gnu: Add r-basic4cseq. |
Date: |
Mon, 6 Nov 2023 12:06:40 +0100 |
* gnu/packages/bioconductor.scm (r-basic4cseq): New variable.
Change-Id: I8a031dc010590a8ef4655633026c9dfac35213c3
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 40402f798f..737d1ca2de 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -22277,6 +22277,37 @@ (define-public r-dir-expiry
eliminating obsolete caches generated by old versions of packages.")
(license license:gpl3)))
+(define-public r-basic4cseq
+ (package
+ (name "r-basic4cseq")
+ (version "1.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "Basic4Cseq" version))
+ (sha256
+ (base32 "1vlrrkg885w77w34m2q8hngr95hhh5bkw9hrzyhnp39igjkcwqx4"))))
+ (properties `((upstream-name . "Basic4Cseq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biostrings
+ r-bsgenome-ecoli-ncbi-20080805
+ r-catools
+ r-genomicalignments
+ r-genomicranges
+ r-rcircos))
+ (home-page "https://bioconductor.org/packages/Basic4Cseq")
+ (synopsis "Analyzing 4C-seq data")
+ (description
+ "Basic4Cseq is an R/Bioconductor package for basic filtering, analysis and
+subsequent visualization of @acronym{4C-seq, circular chromosome conformation
+capture sequencing} data. Virtual fragment libraries can be created for any
+BSGenome package, and filter functions for both reads and fragments and basic
+quality controls are included. Fragment data in the vicinity of the
experiment's
+viewpoint can be visualized as a coverage plot based on a running median
approach
+and a multi-scale contact profile.")
+ (license license:lgpl3)))
+
(define-public r-basilisk-utils
(package
(name "r-basilisk-utils")
--
2.41.0
- [bug#66966] [Patch] gnu: Add r-bcrank, r-bbcanalyzer, r-baynorm, r-bb, r-bayesspace, r-rcppdist, r-bayesknockdown, r-basicstarrseq, r-basics, r-basic4cseq, r-bsgenome-ecoli-ncbi-20080805, r-bags and r-breastcancervdx, Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 01/13] gnu: Add r-breastcancervdx., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 05/13] gnu: Add r-basics., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 02/13] gnu: Add r-bags., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 10/13] gnu: Add r-bb., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 04/13] gnu: Add r-basic4cseq.,
Mădălin Ionel Patrașcu <=
- [bug#66966] [PATCH 07/13] gnu: Add r-bayesknockdown., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 11/13] gnu: Add r-baynorm., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 13/13] gnu: Add r-bcrank., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 09/13] gnu: Add r-bayesspace., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 08/13] gnu: Add r-rcppdist., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 12/13] gnu: Add r-bbcanalyzer., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 03/13] gnu: Add r-bsgenome-ecoli-ncbi-20080805., Mădălin Ionel Patrașcu, 2023/11/06
- [bug#66966] [PATCH 06/13] gnu: Add r-basicstarrseq., Mădălin Ionel Patrașcu, 2023/11/06
- bug#66966: [PATCH 01/13] gnu: Add r-breastcancervdx., Ricardo Wurmus, 2023/11/13