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branch master updated: gnu: Add python-iced.
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guix-commits |
Subject: |
branch master updated: gnu: Add python-iced. |
Date: |
Mon, 21 Jun 2021 07:03:03 -0400 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new 8a62d86 gnu: Add python-iced.
8a62d86 is described below
commit 8a62d8685af8eb0b913c86a9a664692fa3399bc0
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Jun 21 13:02:39 2021 +0200
gnu: Add python-iced.
* gnu/packages/bioinformatics.scm (python-iced): New variable.
---
gnu/packages/bioinformatics.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 7a1c8cc..85d4e5a 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11957,6 +11957,30 @@ options), bedgraph, links (represented as arcs), and
Hi-C matrices.
pyGenomeTracks can make plots with or without Hi-C data.")
(license license:gpl3+)))
+(define-public python-iced
+ (package
+ (name "python-iced")
+ (version "0.5.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "iced" version))
+ (sha256
+ (base32
+ "1avcjmpyyvhgbj5qca4l70ipiz7j3xmcw9p6rd9c06j99faa0r71"))))
+ (build-system python-build-system)
+ (arguments `(#:tests? #false)) ; there are none
+ (propagated-inputs
+ `(("python-numpy" ,python-numpy)
+ ("python-pandas" ,python-pandas)
+ ("python-scipy" ,python-scipy)
+ ("python-scikit-learn" ,python-scikit-learn)))
+ (home-page "https://github.com/hiclib/iced")
+ (synopsis "ICE normalization")
+ (description "This is a package for normalizing Hi-C contact counts
+efficiently.")
+ (license license:bsd-3)))
+
(define-public python-hic2cool
(package
(name "python-hic2cool")
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