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[BUG] conda doesn't work in ob-shell sessions
From: |
Matt |
Subject: |
[BUG] conda doesn't work in ob-shell sessions |
Date: |
Mon, 13 Feb 2023 15:11:31 -0500 |
User-agent: |
Zoho Mail |
---- On Sun, 12 Feb 2023 22:16:16 -0500 Jack Kamm wrote ---
> But I also noticed another prompt-related issue: conda doesn't seem to
> work in ob-shell sessions anymore. That is a bigger problem for my use
> case.
Could you elaborate?
It looks like conda has a new init (from what I remember) which requires users
to run a `conda init <shell>' command in order to create a new environment.
For example, I needed to run `conda init bash.' This added garbage to my
.bashrc which automatically enabled the base environment. I was able to do
this from ob-shell, however it required me to reload the shell (I reloaded
Emacs to be sure I got the latest environment variables). After this, I was
able to create and activate a new conda environment.
1. M-x shell
2. Executing the following in sequence:
#+begin_src emacs-lisp
(org-version nil t)
#+end_src
#+RESULTS:
: Org mode version 9.6.1 (release_9.6.1-250-ge6353d @
/home/user/Projects/org-mode/lisp/)
#+begin_src emacs-lisp
(org-babel-do-load-languages
'org-babel-load-languages
'((shell . t)))
#+end_src
#+begin_src sh :session *shell* :results output
conda create --yes --name myenv python=3.9
#+end_src
#+RESULTS:
#+begin_example
<results removed for brevity>
Downloading and Extracting Packages
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
To activate this environment, use
conda activate myenv
To deactivate an active environment, use
conda deactivate
#+end_example
#+begin_src sh :session *shell* :results output
conda activate myenv
#+end_src
#+RESULTS:
#+begin_src sh :session *shell* :results output
which python
#+end_src
#+RESULTS:
: /home/user/miniconda3/envs/myenv/bin/python
The *shell* buffer's prompt also showed the expected [myenv] prefix.
- Re: [PATCH] Async evaluation in ob-shell, (continued)
- Re: [PATCH] Async evaluation in ob-shell, jackkamm, 2023/02/11
- Re: [PATCH] Async evaluation in ob-shell, Matt, 2023/02/12
- Re: [PATCH] Async evaluation in ob-shell, Jack Kamm, 2023/02/12
- [BUG] shell sessions started outside of Babel broken, Matt, 2023/02/13
- Re: [BUG] shell sessions started outside of Babel broken, Jack Kamm, 2023/02/15
- Re: [BUG] shell sessions started outside of Babel broken, Ihor Radchenko, 2023/02/16
- Re: [BUG] shell sessions started outside of Babel broken, Jack Kamm, 2023/02/19
- Re: [BUG] shell sessions started outside of Babel broken, Ihor Radchenko, 2023/02/20
- Re: [BUG] shell sessions started outside of Babel broken, Jack Kamm, 2023/02/21
- Re: [BUG] shell sessions started outside of Babel broken, Ihor Radchenko, 2023/02/22
- [BUG] conda doesn't work in ob-shell sessions,
Matt <=
- Re: [BUG] conda doesn't work in ob-shell sessions, Jack Kamm, 2023/02/15