bug#61656: closed ([PATCH 00/24] Update some Bioconductor packages)

[GNU bug Tracking System]

Your message dated Fri, 24 Feb 2023 08:12:53 +0100
with message-id <87356vk02q.fsf@elephly.net>
and subject line Re: [bug#61656] [PATCH 00/24] Update some Bioconductor packages
has caused the debbugs.gnu.org bug report #61656,
regarding [PATCH 00/24] Update some Bioconductor packages
to be marked as done.

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61656: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=61656
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 00/24] Update some Bioconductor packages
>
>
>
>
> Date: 
>
> Mon, 20 Feb 2023 16:59:51 +0100
>
>
>
>
> Hi,
>
> Noting that the recent CRAN update breaks r-cytolib, here is a fix by
> updating.  So let also take the opportunity for an update of Bioconductor.
>
> Cheers,
> simon
>
>
> Simon Tournier (24):
>   gnu: r-cytolib: Update to 2.10.1.
>   gnu: r-annotationforge: Update to 1.40.1.
>   gnu: r-bsgenome: Update to 1.66.3.
>   gnu: r-deseq2: Update to 1.38.3.
>   gnu: r-edger: Update to 3.40.2.
>   gnu: r-genefilter: Update to 1.80.3.
>   gnu: r-genomeinfodb: Update to 1.34.9.
>   gnu: r-genomicfeatures: Update to 1.50.4.
>   gnu: r-impute: Update to 1.72.3.
>   gnu: r-limma: Update to 3.54.1.
>   gnu: r-stringdb: Update to 2.10.1.
>   gnu: r-variantannotation: Update to 1.44.1.
>   gnu: r-oligo: Update to 1.62.2.
>   gnu: r-interactionset: Update to 1.26.1.
>   gnu: r-dnacopy: Update to 1.72.3.
>   gnu: r-lpsymphony: Update to 1.26.3.
>   gnu: r-massspecwavelet: Update to 1.64.1.
>   gnu: r-biocfilecache: Update to 2.6.1.
>   gnu: r-variancepartition: Update to 1.28.4.
>   gnu: r-preprocesscore: Update to 1.60.2.
>   gnu: r-scuttle: Update to 1.8.4.
>   gnu: r-scran: Update to 1.26.2.
>   gnu: r-gviz: Update to 1.42.1.
>   gnu: r-tximeta: Update to 1.16.1.
>
>  gnu/packages/bioconductor.scm | 99 +++++++++++++++++------------------
>  1 file changed, 48 insertions(+), 51 deletions(-)
>
>
> base-commit: 53e27f8abf1163e29fb5fc17af38b90a67a18138
> -- 
> 2.38.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#61656] [PATCH 00/24] Update some Bioconductor packages
>
>
>
>
> Date: 
>
> Fri, 24 Feb 2023 08:12:53 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.13; emacs 28.2
>
>
>
>
> Hi Simon,
>
> > Noting that the recent CRAN update breaks r-cytolib, here is a fix by
> > updating.  So let also take the opportunity for an update of Bioconductor.
>
> Thank you for noticing, fixing, and upgrading!
>
> I applied them all.
>
> -- 
> Ricardo
>
>
> --- End Message ---