bug#61254: closed ([PATCH] gnu: Add r-psupertime.)

[GNU bug Tracking System]

Your message dated Fri, 03 Feb 2023 16:53:47 +0100
with message-id <875yci91vx.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-psupertime.
has caused the debbugs.gnu.org bug report #61254,
regarding [PATCH] gnu: Add r-psupertime.
to be marked as done.

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-- 
61254: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=61254
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-psupertime.
>
>
>
>
> Date: 
>
> Fri, 3 Feb 2023 14:44:02 +0100
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-psupertime): New variable.
> ---
>  gnu/packages/bioinformatics.scm | 44 +++++++++++++++++++++++++++++++++
>  1 file changed, 44 insertions(+)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index b8676b0ece..703d71fb68 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -8229,6 +8229,50 @@ (define-public r-doubletcollection
>  benchmark of those eight mentioned methods.")
>        (license license:gpl3+))))
>  
> +(define-public r-psupertime
> +  (let ((commit "73825a28d3bd9bc881c15ee0c4c218eec1c9c207")
> +        (revision "1"))
> +    (package
> +      (name "r-psupertime")
> +      (version (git-version "0.2.6" revision commit))
> +      (source (origin
> +                (method git-fetch)
> +                (uri (git-reference
> +                      (url "https://github.com/wmacnair/psupertime";)
> +                      (commit commit)))
> +                (file-name (git-file-name name version))
> +                (sha256
> +                 (base32
> +                  "00h1r3ffz6m9dwcgkvyki8405b059qn6mnjsd8d76a1rabaf2vfh"))))
> +      (properties `((upstream-name . "psupertime")))
> +      (build-system r-build-system)
> +      (propagated-inputs (list r-cowplot
> +                               r-data-table
> +                               r-fastcluster
> +                               r-forcats
> +                               r-ggplot2
> +                               r-glmnet
> +                               r-knitr
> +                               r-matrix
> +                               r-rcolorbrewer
> +                               r-scales
> +                               r-scran
> +                               r-singlecellexperiment
> +                               r-stringr
> +                               r-summarizedexperiment
> +                               r-topgo))
> +      (native-inputs (list r-knitr))
> +      (home-page "https://github.com/wmacnair/psupertime";)
> +      (synopsis
> +       "Psupertime is supervised pseudotime for single cell RNAseq data")
> +      (description
> +       "Psupertime uses single cell RNAseq data, where the cells have a known 
> ordering.
> +This ordering helps to identify a small number of genes which place
> +cells in that known order.  It can be used for discovery of relevant
> +genes, for identification of subpopulations, and characterization of
> +further unknown or differently labelled data.")
> +      (license license:gpl3))))
> +
>  (define-public r-pando
>    (package
>      (name "r-pando")
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-psupertime.
>
>
>
>
> Date: 
>
> Fri, 03 Feb 2023 16:53:47 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.13; emacs 28.2
>
>
>
>
> Thanks for the patch.  Applied!
>
> -- 
> Ricardo
>
>
> --- End Message ---