bug#61250: closed ([PATCH 1/3] gnu: Add r-viper.)

[GNU bug Tracking System]

Your message dated Fri, 03 Feb 2023 16:47:28 +0100
with message-id <87ilgi92c2.fsf@elephly.net>
and subject line [PATCH 1/3] gnu: Add r-viper.
has caused the debbugs.gnu.org bug report #61250,
regarding [PATCH 1/3] gnu: Add r-viper.
to be marked as done.

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-- 
61250: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=61250
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/3] gnu: Add r-viper.
>
>
>
>
> Date: 
>
> Fri, 3 Feb 2023 13:18:52 +0100
>
>
>
>
> * gnu/packages/bioconductor.scm (r-viper): New variable.
> ---
>  gnu/packages/bioconductor.scm | 21 +++++++++++++++++++++
>  1 file changed, 21 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 711b988e7f..aeef6f4106 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -8307,6 +8307,27 @@ (define-public r-variantannotation
>  coding changes and predict coding outcomes.")
>      (license license:artistic2.0)))
>  
> +(define-public r-viper
> +  (package
> +    (name "r-viper")
> +    (version "1.32.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "viper" version))
> +              (sha256
> +               (base32
> +                "11i2q9nakh534nx2l736id7k1yqhk7jpg32sbfl4vrnh398q86h6"))))
> +    (properties `((upstream-name . "viper")))
> +    (build-system r-build-system)
> +    (propagated-inputs (list r-biobase r-e1071 r-kernsmooth r-mixtools))
> +    (home-page "https://bioconductor.org/packages/viper";)
> +    (synopsis
> +     "Virtual inference of protein-activity by enriched regulon analysis")
> +    (description
> +     "Inference of protein activity from gene expression data.
> +Including the VIPER and msVIPER algorithms")
> +    (license license:gpl2+)))
> +
>  (define-public r-vsn
>    (package
>      (name "r-vsn")
> -- 
> 2.34.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH 1/3] gnu: Add r-viper.
>
>
>
>
> Date: 
>
> Fri, 03 Feb 2023 16:47:28 +0100
>
>
>
>
> User-agent: 
>
> mu4e 1.8.13; emacs 28.2
>
>
>
>
> Unfortunately, we cannot add this to Guix.   The license says:
>
>   c. You agree that You will only use the Program and Documentation for
>      non-commercial internal academic or educational research purposes
>      only. You will not (i) reproduce or copy the Program (ii) use, or
>      cause or permit the use of, the Program in whole or in part for any
>      purpose other than as permitted under this License; (iii)
>      distribute, sell, lease, license or otherwise make the Program
>      available to a third party outside Your organization; or (iv)
>      reverse engineer, decompile, or disassemble the Program.
>
> I have instead added the package to guix-science-nonfree.
>
> -- 
> Ricardo
>
>
> --- End Message ---