Something broke from 20140622 to 20140822

[Vestergaard, Gisle Alberg]

Hi

 

This works (parallel version 20140622):
cat 10000_illumina_reads.trimmed_and_processed.sortbylength.fa | ~/bin/Programs/Parallel/parallel-20140622/src/parallel --block 100k --recstart '>' --pipe "cat > {#}; usearch -cluster_fast {#} -id 0.9 -centroids {#}.out; cat {#}.out >> tyt; rm {#} {#}.out"

 

This does not with (parallel-20140822)

cat 10000_illumina_reads.trimmed_and_processed.sortbylength.fa | ~/bin/Programs/parallel-20140822/src/parallel --block 100k --recstart '>' --pipe "cat > {#}; usearch -cluster_fast {#} -id 0.9 -centroids {#}.out; cat {#}.out >> tyt2; rm {#} {#}.out"

 

This does also not work with (parallel-20140822)

~/bin/Programs/parallel-20140822/src/parallel --pipepart -a 10000_illumina_reads.trimmed_and_processed.sortbylength.fa --block 100k --recstart '>' --cat "usearch -cluster_fast {} -id 0.9 -centroids {#}.out; tail -n +7 {#}.out; rm {#}.out"

 

Please advice

 

Gisle Vestergaard

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10000_illumina_reads.trimmed_and_processed.sortbylength.fa
Description: 10000_illumina_reads.trimmed_and_processed.sortbylength.fa