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[Octave-bug-tracker] [bug #45406] netcdf package install fails
From: |
anonymous |
Subject: |
[Octave-bug-tracker] [bug #45406] netcdf package install fails |
Date: |
Thu, 25 Jun 2015 12:36:43 +0000 |
User-agent: |
Mozilla/5.0 (Macintosh; Intel Mac OS X 10.10; rv:38.0) Gecko/20100101 Firefox/38.0 |
URL:
<http://savannah.gnu.org/bugs/?45406>
Summary: netcdf package install fails
Project: GNU Octave
Submitted by: None
Submitted on: Thu 25 Jun 2015 12:36:41 PM UTC
Category: Octave Forge Package
Severity: 3 - Normal
Priority: 5 - Normal
Item Group: Build Failure
Status: None
Assigned to: None
Originator Name: Greg King
Originator Email: address@hidden
Open/Closed: Open
Discussion Lock: Any
Release: 3.8.2
Operating System: Mac OS
_______________________________________________________
Details:
I just installed octave on mac osx Yosemite, using homebrew.
Octave install was okay. The version homebrew installed was 3.8.2.
I then tried to install the netcdf package from the octave gui. That failed.
The output is below.
What to do??
greg king
pkg install -forge netcdf
warning: creating installation directory /Users/gking/octave
In file included from __netcdf__.cc:17:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/../octave/oct.h:36:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/defun-dld.h:30:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/defun-int.h:28:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/ov-builtin.h:28:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/ov-fcn.h:32:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/oct-obj.h:34:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/ov.h:42:
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/oct-hdf5.h:27:10:
fatal error: 'hdf5.h' file
not found
#include <hdf5.h>
^
1 error generated.
make: *** [__netcdf__.oct] Error 1
/usr/local/Cellar/octave/3.8.2_1/bin/mkoctfile-3.8.2 -DHAVE_OCTAVE_ -v
-I/usr/local/Cellar/netcdf/4.3.3.1/include __netcdf__.cc
-L/usr/local/Cellar/netcdf/4.3.3.1/lib -lnetcdf
clang++ -c -fPIC
-I/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/..
-I/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave
-I/usr/local/Cellar/octave/3.8.2_1/include
-I/Library/Java/JavaVirtualMachines/jdk1.8.0_40.jdk/Contents/Home/include
-I/Library/Java/JavaVirtualMachines/jdk1.8.0_40.jdk/Contents/Home/include/darwin
-D_REENTRANT -D_THREAD_SAFE -pthread
-I/usr/local/Cellar/netcdf/4.3.3.1/include -DHAVE_OCTAVE_ __netcdf__.cc -o
__netcdf__.o
pkg: error running `make' for the netcdf package.
error: called from 'configure_make' in file
/usr/local/Cellar/octave/3.8.2_1/share/octave/3.8.2/m/pkg/private/configure_make.m
near line 82, column 9
error: called from:
error:
/usr/local/Cellar/octave/3.8.2_1/share/octave/3.8.2/m/pkg/private/install.m at
line 199, column 5
error: /usr/local/Cellar/octave/3.8.2_1/share/octave/3.8.2/m/pkg/pkg.m at
line 394, column 9
>>
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