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[igraph] Random Walk Sample


From: Thomas
Subject: [igraph] Random Walk Sample
Date: Thu, 24 Oct 2013 14:10:12 +0100

I'm creating a sample of nodes according to the random walk procedure described in Section 3.3.3 of:

http://www.stat.cmu.edu/~fienberg/Stat36-835/Leskovec-sampling-kdd06.pdf

The following R code samples no less than 300 nodes, although it might sample the same node twice but it runs really slowly. Does anyone know why it might be going so slow? Is there any better way to do this?

Thank you,

Thomas

#Random Walk Sample of nodes from network g
#Read graph g in as UNDIRECTED

 A <- sample(1:length(degree(g)), 1)
 oput <- c()
 oput <- c(oput, A)
 flag <- FALSE
 count <- 1

 while(count <= 300)
 {
 node1 <- A
 while(flag==FALSE)
 {
 node2 <- sample(neighbors(g,node1),1)
 oput <- c(oput, node2)
 count <- count + 1
 node1 <- node2
 if(rbinom(1,1,0.15)==1){flag=TRUE}
 }#end of while flag loop
 }#end of while count loop
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