Re: Octave install fail

[Alexander Hansen]

On Mon, Aug 19, 2013 at 2:52 PM, Riedel, Joseph E (392L) <address@hidden> wrote:

Hi, 

Can someone comment on this error (after about 4 hours of processing on a mac book pro):

Thanks for any advice/comments!

Ed

dhcp-78-16-217:~/A_Work/Octave2] jer% sudo port clean atlas

--->  Cleaning atlas

[dhcp-78-16-217:~/A_Work/Octave2] jer% sudo port install octave-devel +atlas+docs +nofortran

--->  Computing dependencies for octave-devel

--->  Dependencies to be installed: SuiteSparse atlas arpack openmpi gcc47 cctools cctools-headers cloog gmp isl gcc_select libgcc libmpc mpfr ppl glpk bison m4 curl curl-ca-bundle libidn epstool ghostscript autoconf automake fontconfig jbig2dec libpaper pkgconfig xorg-libXext fop xmlto coreutils docbook-xml docbook-xml-4.1.2 docbook-xml-4.2 xmlcatmgr docbook-xml-4.3 docbook-xml-4.4 docbook-xml-4.5 docbook-xml-5.0 docbook-xsl findutils getopt libxslt xorg-libX11 xorg-bigreqsproto xorg-sgml-doctools xorg-inputproto xorg-kbproto xorg-libXau xorg-xproto xorg-libXdmcp xorg-libxcb doxygen flex graphviz gd2 xpm xorg-libXt xorg-libsm xorg-libice xorg-xtrans gts glib2 netpbm jbigkit libLASi pango Xft2 xrender xorg-renderproto cairo libpixman lzo2 xorg-xcb-util gobject-introspection harfbuzz graphite2 urw-fonts webp xorg-libXaw groff psutils texinfo xorg-libXmu texlive texlive-basic texlive-bin harfbuzz-icu icu libzzip poppler gtk-doc gnome-doc-utils iso-codes py27-libxml2 rarian openjpeg15 poppler-data t1lib texlive-common texlive-bin-extra detex dvipng latexdiff p5.12-algorithm-diff latexmk texlive-latex pdfjam texlive-latex-recommended pgf texlive-context texlive-fonts-recommended texlive-math-extra texlive-metapost texlive-xetex texlive-generic-recommended texlive-fontutils lcdf-typetools ps2eps t1utils texlive-lang-czechslovak texlive-lang-english texlive-lang-european texlive-lang-french texlive-lang-german texlive-lang-italian texlive-lang-polish texlive-lang-portuguese texlive-lang-spanish texlive-luatex texlive-plain-extra texlive-latex-extra texlive-pictures xorg-libpthread-stubs xorg-xcb-proto xorg-xcmiscproto xorg-xextproto xorg-xf86bigfontproto xorg-util-macros fftw-3 fftw-3-single gawk readline gnuplot aquaterm lua pdflib gperf grep pcre gsed hdf5-18 less pstoedit ImageMagick plotutils qhull qrupdate transfig

--->  Fetching distfiles for atlas

--->  Verifying checksums for atlas

--->  Extracting atlas

--->  Applying patches to atlas

--->  Configuring atlas

Selected C compiler: /opt/local/bin/clang-mp-3.3

--->  Building atlas

--->  Staging atlas into destroot

--->  Installing atlas @3.10.1_5+mpclang33+nofortran

--->  Activating atlas @3.10.1_5+mpclang33+nofortran

--->  Cleaning atlas

--->  Fetching archive for SuiteSparse

--->  Attempting to fetch SuiteSparse-4.1.0_0+atlas.darwin_11.x86_64.tbz2 from http://packages.macports.org/SuiteSparse

--->  Attempting to fetch SuiteSparse-4.1.0_0+atlas.darwin_11.x86_64.tbz2 from http://lil.fr.packages.macports.org/SuiteSparse

--->  Attempting to fetch SuiteSparse-4.1.0_0+atlas.darwin_11.x86_64.tbz2 from http://mse.uk.packages.macports.org/sites/packages.macports.org/SuiteSparse

--->  Fetching distfiles for SuiteSparse

--->  Attempting to fetch SuiteSparse-4.1.0.tar.gz from http://distfiles.macports.org/SuiteSparse

--->  Verifying checksums for SuiteSparse

--->  Extracting SuiteSparse

--->  Applying patches to SuiteSparse

--->  Configuring SuiteSparse

--->  Building SuiteSparse

--->  Staging SuiteSparse into destroot

Error: org.macports.destroot for port SuiteSparse returned: command execution failed

Error: Failed to install SuiteSparse

Please see the log file for port SuiteSparse for details:

    /opt/local/var/macports/logs/_opt_local_var_macports_sources_rsync.macports.org_release_tarballs_ports_math_SuiteSparse/SuiteSparse/main.log

Error: The following dependencies were not installed: SuiteSparse arpack openmpi gcc47 cctools cctools-headers cloog gmp isl gcc_select libgcc libmpc mpfr ppl glpk bison m4 curl curl-ca-bundle libidn epstool ghostscript autoconf automake fontconfig jbig2dec libpaper pkgconfig xorg-libXext fop xmlto coreutils docbook-xml docbook-xml-4.1.2 docbook-xml-4.2 xmlcatmgr docbook-xml-4.3 docbook-xml-4.4 docbook-xml-4.5 docbook-xml-5.0 docbook-xsl findutils getopt libxslt xorg-libX11 xorg-bigreqsproto xorg-sgml-doctools xorg-inputproto xorg-kbproto xorg-libXau xorg-xproto xorg-libXdmcp xorg-libxcb doxygen flex graphviz gd2 xpm xorg-libXt xorg-libsm xorg-libice xorg-xtrans gts glib2 netpbm jbigkit libLASi pango Xft2 xrender xorg-renderproto cairo libpixman lzo2 xorg-xcb-util gobject-introspection harfbuzz graphite2 urw-fonts webp xorg-libXaw groff psutils texinfo xorg-libXmu texlive texlive-basic texlive-bin harfbuzz-icu icu libzzip poppler gtk-doc gnome-doc-utils iso-codes py27-libxml2 rarian openjpeg15 poppler-data t1lib texlive-common texlive-bin-extra detex dvipng latexdiff p5.12-algorithm-diff latexmk texlive-latex pdfjam texlive-latex-recommended pgf texlive-context texlive-fonts-recommended texlive-math-extra texlive-metapost texlive-xetex texlive-generic-recommended texlive-fontutils lcdf-typetools ps2eps t1utils texlive-lang-czechslovak texlive-lang-english texlive-lang-european texlive-lang-french texlive-lang-german texlive-lang-italian texlive-lang-polish texlive-lang-portuguese texlive-lang-spanish texlive-luatex texlive-plain-extra texlive-latex-extra texlive-pictures xorg-libpthread-stubs xorg-xcb-proto xorg-xcmiscproto xorg-xextproto xorg-xf86bigfontproto xorg-util-macros fftw-3 fftw-3-single gawk readline gnuplot aquaterm lua pdflib gperf grep pcre gsed hdf5-18 less pstoedit ImageMagick plotutils qhull qrupdate transfig

To report a bug, follow the instructions in the guide:

    http://guide.macports.org/#project.tickets

Error: Processing of port octave-devel failed

[dhcp-78-16-217:~/A_Work/Octave2] jer% 

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|         Ed Riedel             |      Jet Propulsion Laboratory     |
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My comments would be:

1) Did you look at the log files that you highlighted in red? 

2) This looks like an issue to report to Macports, particularly since the error didn't actually involve building Octave.

--
Alexander K. Hansen, Ph. D.
akh AT finkproject DOT org
Fink User Liaison and Documenter