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Re: how to test lapack


From: Matyas
Subject: Re: how to test lapack
Date: Sat, 05 Dec 2009 21:03:37 -0600
User-agent: Mozilla-Thunderbird 2.0.0.22 (X11/20090707)

Ben Abbott wrote:
> (1) Please tell us what version of Octave your are building.

3.2.1. I have downloaded the tar file earlier this week.  I normally
use the octave packaged with Debian, however I could not figure out
how to specify my own lapack when using apt-get.  I did not dare to
ask a forum about that since Debian packages an older 3.0 version.
(And anyway that may be more of a Debian question.)

> (2) Please show us the configure command you used.

I just reran it to capture all the output:
./configure
--with-lapack=/home/sustik/School/lapack-3.2.1/tmp_lapack/lapack.so.3.2.1 >
configure.out 2>&1

> (3) Show us what the result of the configure process was.

I attach configure.out produced by the previous command.

Thanks for your response!
Matyas
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
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checking for unistd.h... yes
checking minix/config.h usability... no
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checking whether it is safe to define __EXTENSIONS__... yes
defining man1dir to be $(mandir)/man1
defining man1ext to be .1
defining doc_cache_file to be $(octetcdir)/doc-cache
defining infofile to be $(infodir)/octave.info
defining octincludedir to be $(includedir)/octave-$(version)
defining fcnfiledir to be $(datadir)/octave/$(version)/m
defining localfcnfiledir to be $(datadir)/octave/site/m
defining localapifcnfiledir to be $(datadir)/octave/site/$(api_version)/m
defining localverfcnfiledir to be $(datadir)/octave/$(version)/site/m
defining octetcdir to be $(datadir)/octave/$(version)/etc
defining octlibdir to be $(libdir)/octave-$(version)
defining archlibdir to be 
$(libexecdir)/octave/$(version)/exec/$(canonical_host_type)
defining localarchlibdir to be 
$(libexecdir)/octave/site/exec/$(canonical_host_type)
defining localapiarchlibdir to be 
$(libexecdir)/octave/$(api_version)/site/exec/$(canonical_host_type)
defining localverarchlibdir to be 
$(libexecdir)/octave/$(version)/site/exec/$(canonical_host_type)
defining octfiledir to be 
$(libexecdir)/octave/$(version)/oct/$(canonical_host_type)
defining localoctfiledir to be 
$(libexecdir)/octave/site/oct/$(canonical_host_type)
defining localapioctfiledir to be 
$(libexecdir)/octave/site/oct/$(api_version)/$(canonical_host_type)
defining localveroctfiledir to be 
$(libexecdir)/octave/$(version)/site/oct/$(canonical_host_type)
defining imagedir to be $(datadir)/octave/$(version)/imagelib
configure: defining __NO_MATH_INLINES avoids buggy GNU libc exp function
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checking whether g++ accepts -g... yes
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checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking how to run the C preprocessor... gcc -E
checking whether gcc needs -traditional... no
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checking whether gcc accepts -mieee-fp... yes
configure: adding -mieee-fp to XTRA_CFLAGS
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configure: adding -mieee-fp to XTRA_CXXFLAGS
checking for sin in -lm... yes
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configure: WARNING: Qhull library not found --- This will result in loss of 
functionality of some geometry functions.
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configure: WARNING: PCRE library not found.  This will result in some loss of 
functionality for the regular expression matching functions.
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checking for gfortran... gfortran
checking whether we are using the GNU Fortran 77 compiler... yes
checking whether gfortran accepts -g... yes
checking how to get verbose linking output from gfortran... -v
checking for Fortran 77 libraries of gfortran...  
-L/usr/lib/gcc/i486-linux-gnu/4.3.2 
-L/usr/lib/gcc/i486-linux-gnu/4.3.2/../../../../lib -L/lib/../lib 
-L/usr/lib/../lib -L/usr/lib/gcc/i486-linux-gnu/4.3.2/../../.. -lhdf5 -lz 
-lgfortranbegin -lgfortran -lm
checking for dummy main to link with Fortran 77 libraries... none
checking for Fortran 77 name-mangling scheme... lower case, underscore, no 
extra underscore
checking whether gfortran accepts -mieee-fp... yes
adding -mieee-fp to FFLAGS
configure: defining FFLAGS to be -O -mieee-fp
checking whether gfortran accepts -ffloat-store... yes
setting F77_FLOAT_STORE_FLAG to -ffloat-store
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checking whether LSAME is called correctly from Fortran... yes
checking whether ISAMAX is called correctly from Fortran... yes
checking whether SDOT is called correctly from Fortran... yes
checking whether DDOT is called correctly from Fortran... yes
checking whether CDOTU is called correctly from Fortran... yes
checking whether ZDOTU is called correctly from Fortran... yes
checking for cheev_ in 
/home/sustik/School/lapack-3.2.1/tmp_lapack/lapack.so.3.2.1... no
checking for cheev_... no
checking for cheev_ in -llapack... yes
checking for sqr1up_ in -lqrupdate... no
configure: WARNING: qrupdate not found. The QR & Cholesky updating functions 
will be slow.
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configure: WARNING: AMD not found. This will result in some lack of 
functionality for sparse matrices.
checking for camd_postorder in -lcamd... no
configure: WARNING: UMFPACK not found.  This will result in some lack of 
functionality for sparse matrices.
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configure: WARNING: COLAMD not found. This will result in some lack of 
functionality for sparse matrices.
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checking suitesparse/ccolamd.h presence... no
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configure: WARNING: CCOLAMD not found. This will result in some lack of 
functionality for sparse matrices.
configure: WARNING: CHOLMOD not found. This will result in some lack of 
functionality for sparse matrices.
checking suitesparse/cs.h usability... no
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configure: WARNING: CXSparse not found. This will result in some lack of 
functionality for sparse matrices.
checking for F77_FUNC(dseupd,DSEUPD) in -larpack... no
configure: WARNING: arpack not found. This will result in a lack of the eigs 
function.
configure: defining FPICFLAG to be -fPIC
configure: defining CPICFLAG to be -fPIC
configure: defining CXXPICFLAG to be -fPIC
configure: defining SHLEXT to be so
configure: defining SHLLIB to be $(SHLEXT)
configure: defining SHLBIN to be 
configure: defining SHLEXT_VER to be $(SHLEXT).$(version)
configure: defining SHLLIB_VER to be $(SHLLIB).$(version)
configure: defining SHLBIN_VER to be $(SHLBIN).$(version)
configure: defining SHLLINKEXT to be 
configure: defining LIBPRE to be lib
configure: defining SHLPRE to be lib
configure: defining SHLLIBPRE to be lib
configure: defining SHLBINPRE to be lib
configure: defining SH_LD to be $(CXX)
configure: defining SH_LDFLAGS to be -shared
configure: defining DL_LD to be $(SH_LD)
configure: defining DL_LDFLAGS to be $(SH_LDFLAGS)
configure: defining MKOCTFILE_DL_LDFLAGS to be -shared -Wl,-Bsymbolic
configure: defining SONAME_FLAGS to be -Wl,-soname -Wl,$@
configure: defining NO_OCT_FILE_STRIP to be false
configure: defining RLD_FLAG to be -Wl,-rpath -Wl,$(octlibdir)
configure: defining TEMPLATE_AR to be $(AR)
configure: defining TEMPLATE_ARFLAGS to be rc
configure: defining CRUFT_DLL_DEFS to be 
configure: defining OCTAVE_DLL_DEFS to be 
configure: defining OCTINTERP_DLL_DEFS to be 
configure: defining OCTGRAPHICS_DLL_DEFS to be 
configure: defining library_path_var to be LD_LIBRARY_PATH
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checking size of long long... 8
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checking whether <new> defines placement delete operator... yes
checking whether C++ supports dynamic auto arrays... yes
checking whether fast integer arithmetics is usable... yes
checking for long double... yes
checking size of long double... 12
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configure: WARNING: I didn't find gperf, but it's only a problem if you need to 
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-DPACKAGE_TARNAME=\\\\\"\\\\\" -DPACKAGE_VERSION=\\\\\"\\\\\" 
-DPACKAGE_STRING=\\\\\"\\\\\" -DPACKAGE_BUGREPORT=\\\\\"\\\\\" 
-DOCTAVE_SOURCE=1 -D_GNU_SOURCE=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 
-DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 
-DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 
-D__EXTENSIONS__=1 -D_POSIX_PTHREAD_SEMANTICS=1 -D_TANDEM_SOURCE=1 
-DSEPCHAR=\':\' -DSEPCHAR_STR=\\\\\":\\\\\" -D__NO_MATH_INLINES=1 
-DCXX_NEW_FRIEND_TEMPLATE_DECL=1 -DCXX_ISO_COMPLIANT_LIBRARY=1 
-DHAVE_X_WINDOWS=1 -DHAVE_LIBM=1 -DHAVE_REGEXEC=1 -DHAVE_REGEX=1 
-DHAVE_ZLIB_H=1 -DHAVE_ZLIB=1 -DHAVE_HDF5_H=1 -DHAVE_HDF5=1 
-DHAVE_H5GGET_NUM_OBJS=1 -DHAVE_FFTW3=1 -DHAVE_IEEE754_DATA_FORMAT=1 
-DF77_FUNC\(name,NAME\)=name\ \#\#\ _ -DF77_FUNC_\(name,NAME\)=name\ \#\#\ _ 
-DHAVE_BLAS=1 -DHAVE_GETHOSTNAME=1 -DHAVE_GETPWNAM=1 -DHAVE_DEV_T=1 
-DHAVE_INO_T=1 -DHAVE_NLINK_T=1 -DHAVE_NLINK_T=1 -DHAVE_LONG_LONG_INT=1 
-DHAVE_UNSIGNED_LONG_LONG_INT=1 -DHAVE_SIGSET_T=1 -DHAVE_SIG_ATOMIC_T=1 
-DSIZEOF_SHORT=2 -DSIZEOF_INT=4 -DSIZEOF_LONG=4 -DSIZEOF_LONG_LONG=8 
-DHAVE_ALLOCA_H=1 -DHAVE_ALLOCA=1 -DHAVE_PLACEMENT_DELETE=1 
-DHAVE_DYNAMIC_AUTO_ARRAYS=1 -DHAVE_FAST_INT_OPS=1 -DSIZEOF_LONG_DOUBLE=12 
-DSTDC_HEADERS=1 -DHAVE_DIRENT_H=1 -DTIME_WITH_SYS_TIME=1 -DHAVE_SYS_WAIT_H=1 
-DHAVE_ASSERT_H=1 -DHAVE_CURSES_H=1 -DHAVE_DLFCN_H=1 -DHAVE_FCNTL_H=1 
-DHAVE_FLOAT_H=1 -DHAVE_GRP_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_LIMITS_H=1 
-DHAVE_LOCALE_H=1 -DHAVE_MEMORY_H=1 -DHAVE_NCURSES_H=1 -DHAVE_POLL_H=1 
-DHAVE_PTHREAD_H=1 -DHAVE_PWD_H=1 -DHAVE_STDINT_H=1 -DHAVE_STDLIB_H=1 
-DHAVE_STRING_H=1 -DHAVE_SYS_IOCTL_H=1 -DHAVE_SYS_PARAM_H=1 -DHAVE_SYS_POLL_H=1 
-DHAVE_SYS_RESOURCE_H=1 -DHAVE_SYS_SELECT_H=1 -DHAVE_SYS_STAT_H=1 
-DHAVE_SYS_TIME_H=1 -DHAVE_SYS_TIMES_H=1 -DHAVE_SYS_TYPES_H=1 
-DHAVE_SYS_UTSNAME_H=1 -DHAVE_TERMCAP_H=1 -DHAVE_UNISTD_H=1 -DHAVE_UTIME_H=1 
-DHAVE_SSTREAM=1 -DHAVE_TERMIOS_H=1 -DHAVE_TERMIO_H=1 -DHAVE_SGTTY_H=1 
-DHAVE_GLOB_H=1 -DHAVE_FNMATCH_H=1 -DHAVE_FNMATCH=1 -DHAVE_GLOB=1 
-DHAVE_ATEXIT=1 -DHAVE_BASENAME=1 -DHAVE_BCOPY=1 -DHAVE_BZERO=1 
-DHAVE_CANONICALIZE_FILE_NAME=1 -DHAVE_CHMOD=1 -DHAVE_DUP2=1 -DHAVE_ENDGRENT=1 
-DHAVE_ENDPWENT=1 -DHAVE_EXECVP=1 -DHAVE_EXPM1=1 -DHAVE_EXPM1F=1 -DHAVE_FCNTL=1 
-DHAVE_FORK=1 -DHAVE_FSTAT=1 -DHAVE_GETCWD=1 -DHAVE_GETEGID=1 -DHAVE_GETEUID=1 
-DHAVE_GETGID=1 -DHAVE_GETGRENT=1 -DHAVE_GETGRGID=1 -DHAVE_GETGRNAM=1 
-DHAVE_GETPGRP=1 -DHAVE_GETPID=1 -DHAVE_GETPPID=1 -DHAVE_GETPWENT=1 
-DHAVE_GETPWUID=1 -DHAVE_GETTIMEOFDAY=1 -DHAVE_GETUID=1 -DHAVE_GETWD=1 
-DHAVE_KILL=1 -DHAVE_LGAMMA=1 -DHAVE_LGAMMAF=1 -DHAVE_LGAMMA_R=1 
-DHAVE_LGAMMAF_R=1 -DHAVE_LINK=1 -DHAVE_LOCALTIME_R=1 -DHAVE_LOG1P=1 
-DHAVE_LOG1PF=1 -DHAVE_LSTAT=1 -DHAVE_MEMMOVE=1 -DHAVE_MKDIR=1 -DHAVE_MKFIFO=1 
-DHAVE_MKSTEMP=1 -DHAVE_ON_EXIT=1 -DHAVE_PIPE=1 -DHAVE_POLL=1 -DHAVE_PUTENV=1 
-DHAVE_RAISE=1 -DHAVE_READLINK=1 -DHAVE_REALPATH=1 -DHAVE_RENAME=1 
-DHAVE_RINDEX=1 -DHAVE_RMDIR=1 -DHAVE_ROUNDL=1 -DHAVE_SELECT=1 
-DHAVE_SETGRENT=1 -DHAVE_SETLOCALE=1 -DHAVE_SETPWENT=1 -DHAVE_SETVBUF=1 
-DHAVE_SIGACTION=1 -DHAVE_SIGLONGJMP=1 -DHAVE_SIGPENDING=1 -DHAVE_SIGPROCMASK=1 
-DHAVE_SIGSUSPEND=1 -DHAVE_SNPRINTF=1 -DHAVE_STAT=1 -DHAVE_STRCASECMP=1 
-DHAVE_STRDUP=1 -DHAVE_STRERROR=1 -DHAVE_STRNCASECMP=1 -DHAVE_STRPTIME=1 
-DHAVE_STRSIGNAL=1 -DHAVE_SYMLINK=1 -DHAVE_TEMPNAM=1 -DHAVE_TGAMMAF=1 
-DHAVE_TRUNC=1 -DHAVE_UMASK=1 -DHAVE_UNAME=1 -DHAVE_UNLINK=1 -DHAVE_USLEEP=1 
-DHAVE_UTIME=1 -DHAVE_VFPRINTF=1 -DHAVE_VSPRINTF=1 -DHAVE_VSNPRINTF=1 
-DHAVE_WAITPID=1 -DHAVE_DECL_EXP2=1 -DHAVE_DECL_ROUND=1 -DHAVE_DECL_TGAMMA=1 
-DHAVE_EXP2=1 -DHAVE_ROUND=1 -DHAVE_TGAMMA=1 -DHAVE_STRFTIME=1 
-DHAVE_C99_VSNPRINTF=1 -DHAVE_LIBDL=1 -DHAVE_DLOPEN=1 -DHAVE_DLSYM=1 
-DHAVE_DLERROR=1 -DHAVE_DLCLOSE=1 -DHAVE_DLOPEN_API=1 
-DENABLE_DYNAMIC_LINKING=1 -DHAVE_TIMEVAL=1 -DHAVE_CMATH_ISNAN=1 
-DHAVE_CMATH_ISNANF=1 -DHAVE_CMATH_ISINF=1 -DHAVE_CMATH_ISINFF=1 
-DHAVE_CMATH_ISFINITE=1 -DHAVE_CMATH_ISFINITEF=1 -DHAVE_FINITE=1 -DHAVE_ISNAN=1 
-DHAVE_ISINF=1 -DHAVE_COPYSIGN=1 -DHAVE_DECL_SIGNBIT=1 -DHAVE_ACOSH=1 
-DHAVE_ACOSHF=1 -DHAVE_ASINH=1 -DHAVE_ASINHF=1 -DHAVE_ATANH=1 -DHAVE_ATANHF=1 
-DHAVE_ERF=1 -DHAVE_ERFF=1 -DHAVE_ERFC=1 -DHAVE_ERFCF=1 -DHAVE_EXP2F=1 
-DHAVE_LOG2=1 -DHAVE_LOG2F=1 -DHAVE_HYPOTF=1 -DHAVE_STRUCT_STAT_ST_BLKSIZE=1 
-DHAVE_STRUCT_STAT_ST_BLOCKS=1 -DHAVE_STRUCT_STAT_ST_RDEV=1 
-DHAVE_STRUCT_TM_TM_ZONE=1 -DHAVE_TM_ZONE=1 -DUSE_READLINE=1 
-DEXCEPTION_IN_MATH=1 -DRETSIGTYPE=void -DHAVE_DECL_SYS_SIGLIST=1 
-DHAVE_POSIX_SIGNALS=1 -DRETSIGTYPE_IS_VOID=1 -DHAVE_GETRUSAGE=1 -DHAVE_TIMES=1 
-DYYTEXT_POINTER=1
checking whether gcc accepts -Wall... yes
adding -Wall to WARN_CFLAGS
checking whether gcc accepts -W... yes
adding -W to WARN_CFLAGS
checking whether gcc accepts -Wshadow... yes
adding -Wshadow to WARN_CFLAGS
checking whether gcc accepts -Wformat... yes
adding -Wformat to WARN_CFLAGS
checking whether g++ accepts -Wall... yes
adding -Wall to WARN_CXXFLAGS
checking whether g++ accepts -W... yes
adding -W to WARN_CXXFLAGS
checking whether g++ accepts -Wshadow... yes
adding -Wshadow to WARN_CXXFLAGS
checking whether g++ accepts -Wold-style-cast... yes
adding -Wold-style-cast to WARN_CXXFLAGS
checking whether g++ accepts -Wformat... yes
adding -Wformat to WARN_CXXFLAGS
configure: creating ./config.status
config.status: creating octMakefile
config.status: creating Makeconf
config.status: creating test/Makefile
config.status: creating doc/Makefile
config.status: creating doc/faq/Makefile
config.status: creating doc/interpreter/Makefile
config.status: creating doc/liboctave/Makefile
config.status: creating doc/refcard/Makefile
config.status: creating emacs/Makefile
config.status: creating examples/Makefile
config.status: creating examples/@polynomial/Makefile
config.status: creating examples/@FIRfilter/Makefile
config.status: creating liboctave/Makefile
config.status: creating liboctave/oct-types.h
config.status: creating src/Makefile
config.status: creating src/mxarray.h
config.status: creating libcruft/Makefile
config.status: creating libcruft/Makerules
config.status: creating libcruft/amos/Makefile
config.status: creating libcruft/blas/Makefile
config.status: creating libcruft/daspk/Makefile
config.status: creating libcruft/dasrt/Makefile
config.status: creating libcruft/dassl/Makefile
config.status: creating libcruft/fftpack/Makefile
config.status: creating libcruft/lapack/Makefile
config.status: creating libcruft/misc/Makefile
config.status: creating libcruft/odepack/Makefile
config.status: creating libcruft/ordered-qz/Makefile
config.status: creating libcruft/quadpack/Makefile
config.status: creating libcruft/ranlib/Makefile
config.status: creating libcruft/slatec-fn/Makefile
config.status: creating libcruft/slatec-err/Makefile
config.status: creating libcruft/villad/Makefile
config.status: creating libcruft/blas-xtra/Makefile
config.status: creating libcruft/lapack-xtra/Makefile
config.status: creating config.h
config.status: config.h is unchanged
config.status: executing Makefile commands
=== configuring in scripts (/home/sustik/School/octave-3.2.3/scripts)
configure: running /bin/sh ./configure '--prefix=/usr/local'  
'--with-lapack=/home/sustik/School/lapack-3.2.1/tmp_lapack/lapack.so.3.2.1' 
--cache-file=/dev/null --srcdir=.
checking for a BSD-compatible install... /usr/bin/install -c
configure: creating ./config.status
config.status: creating Makefile
config.status: creating audio/Makefile
config.status: creating deprecated/Makefile
config.status: creating elfun/Makefile
config.status: creating general/Makefile
config.status: creating geometry/Makefile
config.status: creating help/Makefile
config.status: creating image/Makefile
config.status: creating io/Makefile
config.status: creating linear-algebra/Makefile
config.status: creating miscellaneous/Makefile
config.status: creating optimization/Makefile
config.status: creating path/Makefile
config.status: creating pkg/Makefile
config.status: creating plot/Makefile
config.status: creating polynomial/Makefile
config.status: creating set/Makefile
config.status: creating signal/Makefile
config.status: creating sparse/Makefile
config.status: creating specfun/Makefile
config.status: creating special-matrix/Makefile
config.status: creating startup/Makefile
config.status: creating statistics/Makefile
config.status: creating statistics/base/Makefile
config.status: creating statistics/distributions/Makefile
config.status: creating statistics/models/Makefile
config.status: creating statistics/tests/Makefile
config.status: creating strings/Makefile
config.status: creating time/Makefile
config.status: creating testfun/Makefile
configure:

Octave is now configured for i686-pc-linux-gnu

  Source directory:     .
  Installation prefix:  /usr/local
  C compiler:           gcc  -mieee-fp  -Wall -W -Wshadow -Wformat -g -O2
  C++ compiler:         g++  -mieee-fp  -Wall -W -Wshadow -Wold-style-cast 
-Wformat -g -O2
  Fortran compiler:     gfortran -O -mieee-fp
  Fortran libraries:     -L/usr/lib/gcc/i486-linux-gnu/4.3.2 
-L/usr/lib/gcc/i486-linux-gnu/4.3.2/../../../../lib -L/lib/../lib 
-L/usr/lib/../lib -L/usr/lib/gcc/i486-linux-gnu/4.3.2/../../.. -lhdf5 -lz 
-lgfortranbegin -lgfortran -lm
  BLAS libraries:       -llapack -lblas
  FFTW libraries:       -lfftw3 -lfftw3f
  GLPK libraries:       
  UMFPACK libraries:    
  AMD libraries:        
  CAMD libraries:       
  COLAMD libraries:     
  CCOLAMD libraries:    
  CHOLMOD libraries:    
  CXSPARSE libraries:   
  ARPACK libraries:     
  QRUPDATE libraries:   
  HDF5 libraries:       -lhdf5
  CURL libraries:       
  REGEX libraries:      
  QHULL libraries:      
  OPENGL libraries:     
  FLTK backend libs:    
  X11 include flags:    
  X11 libraries:        -lX11
  CARBON libraries:     
  LIBS:                 -lreadline  -lncurses -ldl -lhdf5 -lz -lm 
  Default pager:        less
  gnuplot:              gnuplot
  Magick config:        

  Do internal array bounds checking:  false
  Build static libraries:             false
  Build shared libraries:             true
  Dynamic Linking:                    true (dlopen)
  Include support for GNU readline:   true
  64-bit array dims and indexing:     false

configure: WARNING: I didn't find gperf, but it's only a problem if you need to 
reconstruct oct-gperf.h
configure: WARNING: UMFPACK not found.  This will result in some lack of 
functionality for sparse matrices.
configure: WARNING: qrupdate not found. The QR & Cholesky updating functions 
will be slow.
configure: WARNING: AMD not found. This will result in some lack of 
functionality for sparse matrices.
configure: WARNING: COLAMD not found. This will result in some lack of 
functionality for sparse matrices.
configure: WARNING: CCOLAMD not found. This will result in some lack of 
functionality for sparse matrices.
configure: WARNING: CHOLMOD not found. This will result in some lack of 
functionality for sparse matrices.
configure: WARNING: CXSparse not found. This will result in some lack of 
functionality for sparse matrices.
configure: WARNING: arpack not found. This will result in a lack of the eigs 
function.
configure: WARNING: GLPK library not found.  The glpk function for solving 
linear programs will be disabled.
configure: WARNING: GraphicsMagick++ config script not found.  Assuming 
GraphicsMagic++ library and header files are missing, so imread will not be 
fully functional
configure: WARNING: PCRE library not found.  This will result in some loss of 
functionality for the regular expression matching functions.
configure: WARNING: Qhull library not found --- This will result in loss of 
functionality of some geometry functions.
configure: WARNING: "FLTK config script not found.  Native graphics will be 
disabled."
configure: WARNING: 
configure: WARNING: I didn't find the necessary libraries to compile native
configure: WARNING: graphics. It isn't necessary to have native graphics
configure: WARNING: but you will have to use gnuplot or you won't be able
configure: WARNING: to use any of Octave's plotting commands
configure: WARNING: 
configure:

NOTE: libraries may be skipped if a library is not found OR
      if the library on your system is missing required features.


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