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[Help-gsl] GSL not detected


From: Francesco Pietra
Subject: [Help-gsl] GSL not detected
Date: Thu, 22 Oct 2009 08:45:19 +0200

Hi:
In the parallel compilation of software OCTOPUS with gfortran on
Debian Linux amd64 lenny, gsl is not seen. Frpm

$ gsl-config --libs-without-cblas
   -L/usr/lib -lgsl -lm

--with-gsl='-L/usr/lib -lgsl -lm'

checking for GSL - version >=1.9 ...no

and several variants of --with-gsl resulted in the same error. As
/usr/bin/gsl-config indicates prefix=/usr, I also tried,
unsuccessfully, --with-gsl='-L/usr -lgsl -lm'

As the problem was not yet solved through the OCTOPUS mailing list, I
am asking help here.

thanks
francesco pietra

below is the complete config.log:

This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.

It was created by Octopus configure 3.1.0, which was
generated by GNU Autoconf 2.63.  Invocation command line was

  $ ./configure --enable-mpi
--with-lapack=-L/opt/acml4.2.0/gfortran64_mp_int64/lib -llapack
--with-blas=-L/opt/acml4.2.0/gfortran64_mp_int64/lib -lblas
--with-gsl=-L/usr -lgsl -lm

## --------- ##
## Platform. ##
## --------- ##

hostname = tya64
uname -m = x86_64
uname -r = 2.6.26-1-amd64
uname -s = Linux
uname -v = #1 SMP Fri Mar 13 17:46:45 UTC 2009

/usr/bin/uname -p = unknown
/bin/uname -X     = unknown

/bin/arch              = unknown
/usr/bin/arch -k       = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo      = unknown
/bin/machine           = unknown
/usr/bin/oslevel       = unknown
/bin/universe          = unknown

PATH: /opt/etsf/bin
PATH: /usr/local/delphi_4.1.1
PATH: /opt/intel/cce/10.1.015/bin
PATH: /opt/intel/fce/10.1.015/bin
PATH: /usr/local/bin/vmd
PATH: /usr/local/chimera/bin
PATH: /opt/etsf/bin
PATH: /usr/local/delphi_4.1.1
PATH: /opt/intel/cce/10.1.015/bin
PATH: /opt/intel/fce/10.1.015/bin
PATH: /usr/local/bin/vmd
PATH: /usr/local/chimera/bin
PATH: /opt/etsf/bin
PATH: /usr/local/delphi_4.1.1
PATH: /opt/intel/cce/10.1.015/bin
PATH: /opt/intel/fce/10.1.015/bin
PATH: /usr/local/bin/vmd
PATH: /usr/local/chimera/bin
PATH: /usr/local/bin
PATH: /usr/bin
PATH: /bin
PATH: /usr/games
PATH: /home/francesco/hole2/exe
PATH: /usr/local/amber10/exe
PATH: /usr/local/dock6/bin
PATH: /home/francesco/hole2/exe
PATH: /usr/local/amber10/exe
PATH: /usr/local/dock6/bin
PATH: /home/francesco/hole2/exe
PATH: /usr/local/amber10/exe
PATH: /usr/local/dock6/bin


## ----------- ##
## Core tests. ##
## ----------- ##

configure:1997: checking for a BSD-compatible install
configure:2065: result: /usr/bin/install -c
configure:2076: checking whether build environment is sane
configure:2119: result: yes
configure:2144: checking for a thread-safe mkdir -p
configure:2183: result: /bin/mkdir -p
configure:2196: checking for gawk
configure:2226: result: no
configure:2196: checking for mawk
configure:2212: found /usr/bin/mawk
configure:2223: result: mawk
configure:2234: checking whether make sets $(MAKE)
configure:2256: result: yes
configure:2454: checking build system type
configure:2472: result: x86_64-unknown-linux-gnu
configure:2494: checking host system type
configure:2509: result: x86_64-unknown-linux-gnu
configure:2547: checking for a BSD-compatible install
configure:2615: result: /usr/bin/install -c
configure:2626: checking whether ln -s works
configure:2630: result: yes
configure:2637: checking whether make sets $(MAKE)
configure:2659: result: yes
configure:2711: checking for ranlib
configure:2727: found /usr/bin/ranlib
configure:2738: result: ranlib
configure:2764: checking for bison
configure:2780: found /usr/bin/bison
configure:2791: result: bison -y
configure:2815: checking for style of include used by make
configure:2843: result: GNU
configure:2913: checking for gcc
configure:2940: result: /usr/lib/lam/bin/mpicc
configure:3172: checking for C compiler version
configure:3180: /usr/lib/lam/bin/mpicc --version >&5
icc (ICC) 10.1 20080312
Copyright (C) 1985-2008 Intel Corporation.  All rights reserved.

configure:3184: $? = 0
configure:3191: /usr/lib/lam/bin/mpicc -v >&5
Version 10.1
configure:3195: $? = 0
configure:3202: /usr/lib/lam/bin/mpicc -V >&5
Intel(R) C Compiler for applications running on Intel(R) 64, Version
10.1    Build 20080312
Copyright (C) 1985-2008 Intel Corporation.  All rights reserved.
FOR NON-COMMERCIAL USE ONLY

configure:3206: $? = 0
configure:3229: checking for C compiler default output file name
configure:3251: /usr/lib/lam/bin/mpicc    conftest.c  >&5
configure:3255: $? = 0
configure:3293: result: a.out
configure:3312: checking whether the C compiler works
configure:3322: ./a.out
configure:3326: $? = 0
configure:3345: result: yes
configure:3352: checking whether we are cross compiling
configure:3354: result: no
configure:3357: checking for suffix of executables
configure:3364: /usr/lib/lam/bin/mpicc -o conftest    conftest.c  >&5
configure:3368: $? = 0
configure:3394: result:
configure:3400: checking for suffix of object files
configure:3426: /usr/lib/lam/bin/mpicc -c   conftest.c >&5
configure:3430: $? = 0
configure:3455: result: o
configure:3459: checking whether we are using the GNU C compiler
configure:3488: /usr/lib/lam/bin/mpicc -c   conftest.c >&5
configure:3495: $? = 0
configure:3512: result: yes
configure:3521: checking whether /usr/lib/lam/bin/mpicc accepts -g
configure:3551: /usr/lib/lam/bin/mpicc -c -g  conftest.c >&5
configure:3558: $? = 0
configure:3659: result: yes
configure:3676: checking for /usr/lib/lam/bin/mpicc option to accept ISO C89
configure:3750: /usr/lib/lam/bin/mpicc  -c -g -O2  conftest.c >&5
configure:3757: $? = 0
configure:3780: result: none needed
configure:3800: checking dependency style of /usr/lib/lam/bin/mpicc
configure:3891: result: gcc3
configure:3915: checking dependency style of /usr/lib/lam/bin/mpicc
configure:4006: result: gcc3
configure:4069: checking for gcc
configure:4096: result: /usr/lib/lam/bin/mpicc
configure:4328: checking for C compiler version
configure:4336: /usr/lib/lam/bin/mpicc --version >&5
icc (ICC) 10.1 20080312
Copyright (C) 1985-2008 Intel Corporation.  All rights reserved.

configure:4340: $? = 0
configure:4347: /usr/lib/lam/bin/mpicc -v >&5
Version 10.1
configure:4351: $? = 0
configure:4358: /usr/lib/lam/bin/mpicc -V >&5
Intel(R) C Compiler for applications running on Intel(R) 64, Version
10.1    Build 20080312
Copyright (C) 1985-2008 Intel Corporation.  All rights reserved.
FOR NON-COMMERCIAL USE ONLY

configure:4362: $? = 0
configure:4365: checking whether we are using the GNU C compiler
configure:4418: result: yes
configure:4427: checking whether /usr/lib/lam/bin/mpicc accepts -g
configure:4565: result: yes
configure:4582: checking for /usr/lib/lam/bin/mpicc option to accept ISO C89
configure:4686: result: none needed
configure:4706: checking dependency style of /usr/lib/lam/bin/mpicc
configure:4797: result: gcc3
configure:4815: checking for inline
configure:4841: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:4848: $? = 0
configure:4866: result: inline
configure:4885: checking for C/C++ restrict keyword
configure:4920: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:4927: $? = 0
configure:4945: result: __restrict
configure:4962: checking for __builtin_prefetch
configure:4995: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:5002: $? = 0
configure:5011: result: yes
configure:5043: checking for dirent.h that defines DIR
configure:5072: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
conftest.c(18): warning #279: controlling expression is constant
  if ((DIR *) 0)
      ^

configure:5079: $? = 0
configure:5096: result: yes
configure:5111: checking for library containing opendir
configure:5152: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
conftest.c(24) (col. 8): warning #980: wrong number of actual
arguments to intrinsic function "opendir"

configure:5159: $? = 0
configure:5190: result: none required
configure:5293: checking how to run the C preprocessor
configure:5333: /usr/lib/lam/bin/mpicc -E  conftest.c
/usr/include/limits.h(125): error #5: could not open source file "limits.h"
  # include_next <limits.h>
                           ^

configure:5340: $? = 2
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| /* end confdefs.h.  */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|                    Syntax error
configure:5333: /usr/lib/lam/bin/mpicc -E  conftest.c
/usr/include/limits.h(125): error #5: could not open source file "limits.h"
  # include_next <limits.h>
                           ^

configure:5340: $? = 2
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| /* end confdefs.h.  */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|                    Syntax error
configure:5333: /usr/lib/lam/bin/mpicc -E -traditional-cpp  conftest.c
<command-line>:11: warning: "__GNUC_PATCHLEVEL__" redefined
<built-in>:3: warning: this is the location of the previous definition
In file included from /usr/include/features.h:331,
                 from /usr/include/assert.h:38,
                 from conftest.c:17:
/usr/include/sys/cdefs.h:32: error: #error "You need a ISO C
conforming compiler to use the glibc headers"
configure:5340: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| /* end confdefs.h.  */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|                    Syntax error
configure:5333: /usr/lib/lam/bin/mpicc -E -traditional-cpp  conftest.c
<command-line>:11: warning: "__GNUC_PATCHLEVEL__" redefined
<built-in>:3: warning: this is the location of the previous definition
In file included from /usr/include/features.h:331,
                 from /usr/include/assert.h:38,
                 from conftest.c:17:
/usr/include/sys/cdefs.h:32: error: #error "You need a ISO C
conforming compiler to use the glibc headers"
configure:5340: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| /* end confdefs.h.  */
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|                    Syntax error
configure:5333: /lib/cpp  conftest.c
configure:5340: $? = 0
configure:5371: /lib/cpp  conftest.c
conftest.c:13:28: error: ac_nonexistent.h: No such file or directory
configure:5378: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:5411: result: /lib/cpp
configure:5440: /lib/cpp  conftest.c
configure:5447: $? = 0
configure:5478: /lib/cpp  conftest.c
conftest.c:13:28: error: ac_nonexistent.h: No such file or directory
configure:5485: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| /* end confdefs.h.  */
| #include <ac_nonexistent.h>
configure:5525: checking for grep that handles long lines and -e
configure:5585: result: /bin/grep
configure:5590: checking for egrep
configure:5654: result: /bin/grep -E
configure:5659: checking for ANSI C header files
configure:5689: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5696: $? = 0
configure:5795: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:5799: $? = 0
configure:5805: ./conftest
configure:5809: $? = 0
configure:5827: result: yes
configure:5851: checking for sys/types.h
configure:5872: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5879: $? = 0
configure:5896: result: yes
configure:5851: checking for sys/stat.h
configure:5872: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5879: $? = 0
configure:5896: result: yes
configure:5851: checking for stdlib.h
configure:5872: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5879: $? = 0
configure:5896: result: yes
configure:5851: checking for string.h
configure:5872: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5879: $? = 0
configure:5896: result: yes
configure:5851: checking for memory.h
configure:5872: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5879: $? = 0
configure:5896: result: yes
configure:5851: checking for strings.h
configure:5872: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5879: $? = 0
configure:5896: result: yes
configure:5851: checking for inttypes.h
configure:5872: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5879: $? = 0
configure:5896: result: yes
configure:5851: checking for stdint.h
configure:5872: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5879: $? = 0
configure:5896: result: yes
configure:5851: checking for unistd.h
configure:5872: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5879: $? = 0
configure:5896: result: yes
configure:5943: checking fcntl.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking fcntl.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for fcntl.h
configure:6063: result: yes
configure:5943: checking float.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking float.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for float.h
configure:6063: result: yes
configure:5943: checking locale.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking locale.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for locale.h
configure:6063: result: yes
configure:5943: checking malloc.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking malloc.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for malloc.h
configure:6063: result: yes
configure:5943: checking stddef.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking stddef.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for stddef.h
configure:6063: result: yes
configure:5932: checking for stdlib.h
configure:5939: result: yes
configure:5932: checking for string.h
configure:5939: result: yes
configure:5932: checking for strings.h
configure:5939: result: yes
configure:5943: checking sys/ioctl.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking sys/ioctl.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for sys/ioctl.h
configure:6063: result: yes
configure:5943: checking sys/time.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking sys/time.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for sys/time.h
configure:6063: result: yes
configure:5943: checking termios.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking termios.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for termios.h
configure:6063: result: yes
configure:5932: checking for unistd.h
configure:5939: result: yes
configure:5943: checking signal.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking signal.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for signal.h
configure:6063: result: yes
configure:5943: checking errno.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking errno.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for errno.h
configure:6063: result: yes
configure:5943: checking xmmintrin.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking xmmintrin.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for xmmintrin.h
configure:6063: result: yes
configure:5943: checking emmintrin.h usability
configure:5960: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:5967: $? = 0
configure:5981: result: yes
configure:5985: checking emmintrin.h presence
configure:6000: /lib/cpp  conftest.c
configure:6007: $? = 0
configure:6021: result: yes
configure:6054: checking for emmintrin.h
configure:6063: result: yes
configure:6080: checking for working alloca.h
configure:6107: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:6114: $? = 0
configure:6134: result: yes
configure:6144: checking for alloca
configure:6191: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:6198: $? = 0
configure:6218: result: yes
configure:6457: checking for an ANSI C-conforming const
configure:6532: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
conftest.c(70): warning #592: variable "t" is used before its value is set
      *t++ = 0;
       ^

conftest.c(86): warning #592: variable "b" is used before its value is set
      struct s *b; b->j = 5;
                   ^

conftest.c(92): warning #592: variable "cs" is used before its value is set
    return !cs[0] && !zero.x;
            ^

configure:6539: $? = 0
configure:6554: result: yes
configure:6564: checking for pid_t
configure:6592: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:6599: $? = 0
configure:6626: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
conftest.c(77): error: expected an expression
  if (sizeof ((pid_t)))
                     ^

compilation aborted for conftest.c (code 2)
configure:6633: $? = 2
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((pid_t)))
|         return 0;
|   ;
|   return 0;
| }
configure:6656: result: yes
configure:6668: checking for size_t
configure:6696: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:6703: $? = 0
configure:6730: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
conftest.c(77): error: expected an expression
  if (sizeof ((size_t)))
                      ^

compilation aborted for conftest.c (code 2)
configure:6737: $? = 2
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((size_t)))
|         return 0;
|   ;
|   return 0;
| }
configure:6760: result: yes
configure:6772: checking whether time.h and sys/time.h may both be included
configure:6802: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
conftest.c(48): warning #279: controlling expression is constant
  if ((struct tm *) 0)
      ^

configure:6809: $? = 0
configure:6824: result: yes
configure:6838: checking size of void*
configure:7143: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:7147: $? = 0
configure:7153: ./conftest
configure:7157: $? = 0
configure:7183: result: 8
configure:7193: checking for uint32_t
configure:7221: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:7228: $? = 0
configure:7255: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
conftest.c(79): error: expected an expression
  if (sizeof ((uint32_t)))
                        ^

compilation aborted for conftest.c (code 2)
configure:7262: $? = 2
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((uint32_t)))
|         return 0;
|   ;
|   return 0;
| }
configure:7285: result: yes
configure:7295: checking for uint64_t
configure:7323: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:7330: $? = 0
configure:7357: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
conftest.c(80): error: expected an expression
  if (sizeof ((uint64_t)))
                        ^

compilation aborted for conftest.c (code 2)
configure:7364: $? = 2
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| if (sizeof ((uint64_t)))
|         return 0;
|   ;
|   return 0;
| }
configure:7387: result: yes
configure:7402: checking size of unsigned int
configure:7707: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:7711: $? = 0
configure:7717: ./conftest
configure:7721: $? = 0
configure:7747: result: 4
configure:7761: checking size of unsigned long
configure:8066: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:8070: $? = 0
configure:8076: ./conftest
configure:8080: $? = 0
configure:8106: result: 8
configure:8120: checking size of unsigned long long
configure:8425: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:8429: $? = 0
configure:8435: ./conftest
configure:8439: $? = 0
configure:8465: result: 8
configure:8477: checking whether getpgrp requires zero arguments
configure:8504: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
conftest.c(84): error #140: too many arguments in function call
  getpgrp (0);
           ^

compilation aborted for conftest.c (code 2)
configure:8511: $? = 2
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| /* end confdefs.h.  */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| #  include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| #  include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| int
| main ()
| {
| getpgrp (0);
|   ;
|   return 0;
| }
configure:8527: result: yes
configure:8538: checking whether /usr/lib/lam/bin/mpicc needs -traditional
configure:8580: result: no
configure:8594: checking whether lstat dereferences a symlink
specified with a trailing slash
configure:8630: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:8634: $? = 0
configure:8640: ./conftest
configure:8644: $? = 0
configure:8668: result: yes
configure:8687: checking whether stat accepts an empty string
configure:8717: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
configure:8721: $? = 0
configure:8727: ./conftest
configure:8731: $? = 0
configure:8748: result: no
configure:8768: checking for vprintf
configure:8824: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:8831: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define vprintf to an innocuous variant, in case <limits.h>
declares vprintf.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define vprintf innocuous_vprintf
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char vprintf (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef vprintf
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char vprintf ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_vprintf || defined __stub___vprintf
| choke me
| #endif
|
| int
| main ()
| {
| return vprintf ();
|   ;
|   return 0;
| }
configure:8853: result: no
configure:8992: checking for getcwd
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define getcwd to an innocuous variant, in case <limits.h> declares getcwd.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define getcwd innocuous_getcwd
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char getcwd (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef getcwd
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char getcwd ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_getcwd || defined __stub___getcwd
| choke me
| #endif
|
| int
| main ()
| {
| return getcwd ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for gettimeofday
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define gettimeofday to an innocuous variant, in case <limits.h>
declares gettimeofday.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define gettimeofday innocuous_gettimeofday
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char gettimeofday (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef gettimeofday
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char gettimeofday ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_gettimeofday || defined __stub___gettimeofday
| choke me
| #endif
|
| int
| main ()
| {
| return gettimeofday ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for mkdir
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define mkdir to an innocuous variant, in case <limits.h> declares mkdir.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define mkdir innocuous_mkdir
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char mkdir (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef mkdir
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char mkdir ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_mkdir || defined __stub___mkdir
| choke me
| #endif
|
| int
| main ()
| {
| return mkdir ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for pow
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define pow to an innocuous variant, in case <limits.h> declares pow.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define pow innocuous_pow
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char pow (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef pow
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char pow ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_pow || defined __stub___pow
| choke me
| #endif
|
| int
| main ()
| {
| return pow ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for sqrt
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define sqrt to an innocuous variant, in case <limits.h> declares sqrt.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define sqrt innocuous_sqrt
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char sqrt (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef sqrt
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char sqrt ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_sqrt || defined __stub___sqrt
| choke me
| #endif
|
| int
| main ()
| {
| return sqrt ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for strcasecmp
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define strcasecmp to an innocuous variant, in case <limits.h>
declares strcasecmp.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strcasecmp innocuous_strcasecmp
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strcasecmp (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef strcasecmp
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strcasecmp ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strcasecmp || defined __stub___strcasecmp
| choke me
| #endif
|
| int
| main ()
| {
| return strcasecmp ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for strdup
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define strdup to an innocuous variant, in case <limits.h> declares strdup.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strdup innocuous_strdup
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strdup (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef strdup
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strdup ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strdup || defined __stub___strdup
| choke me
| #endif
|
| int
| main ()
| {
| return strdup ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for strerror
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define strerror to an innocuous variant, in case <limits.h>
declares strerror.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strerror innocuous_strerror
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strerror (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef strerror
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strerror ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strerror || defined __stub___strerror
| choke me
| #endif
|
| int
| main ()
| {
| return strerror ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for strncasecmp
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define strncasecmp to an innocuous variant, in case <limits.h>
declares strncasecmp.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strncasecmp innocuous_strncasecmp
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strncasecmp (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef strncasecmp
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strncasecmp ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strncasecmp || defined __stub___strncasecmp
| choke me
| #endif
|
| int
| main ()
| {
| return strncasecmp ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for strndup
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define strndup to an innocuous variant, in case <limits.h>
declares strndup.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strndup innocuous_strndup
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strndup (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef strndup
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strndup ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strndup || defined __stub___strndup
| choke me
| #endif
|
| int
| main ()
| {
| return strndup ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for uname
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define uname to an innocuous variant, in case <limits.h> declares uname.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define uname innocuous_uname
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char uname (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef uname
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char uname ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_uname || defined __stub___uname
| choke me
| #endif
|
| int
| main ()
| {
| return uname ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for tcgetpgrp
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define tcgetpgrp to an innocuous variant, in case <limits.h>
declares tcgetpgrp.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define tcgetpgrp innocuous_tcgetpgrp
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char tcgetpgrp (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef tcgetpgrp
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char tcgetpgrp ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_tcgetpgrp || defined __stub___tcgetpgrp
| choke me
| #endif
|
| int
| main ()
| {
| return tcgetpgrp ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for scandir
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define scandir to an innocuous variant, in case <limits.h>
declares scandir.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define scandir innocuous_scandir
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char scandir (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef scandir
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char scandir ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_scandir || defined __stub___scandir
| choke me
| #endif
|
| int
| main ()
| {
| return scandir ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for alphasort
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define alphasort to an innocuous variant, in case <limits.h>
declares alphasort.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define alphasort innocuous_alphasort
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char alphasort (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef alphasort
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char alphasort ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_alphasort || defined __stub___alphasort
| choke me
| #endif
|
| int
| main ()
| {
| return alphasort ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for sigaction
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define sigaction to an innocuous variant, in case <limits.h>
declares sigaction.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define sigaction innocuous_sigaction
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char sigaction (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef sigaction
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char sigaction ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_sigaction || defined __stub___sigaction
| choke me
| #endif
|
| int
| main ()
| {
| return sigaction ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for malloc
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define malloc to an innocuous variant, in case <limits.h> declares malloc.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define malloc innocuous_malloc
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char malloc (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef malloc
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char malloc ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_malloc || defined __stub___malloc
| choke me
| #endif
|
| int
| main ()
| {
| return malloc ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for realloc
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define realloc to an innocuous variant, in case <limits.h>
declares realloc.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define realloc innocuous_realloc
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char realloc (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef realloc
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char realloc ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_realloc || defined __stub___realloc
| choke me
| #endif
|
| int
| main ()
| {
| return realloc ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for opendir
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define opendir to an innocuous variant, in case <limits.h>
declares opendir.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define opendir innocuous_opendir
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char opendir (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef opendir
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char opendir ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_opendir || defined __stub___opendir
| choke me
| #endif
|
| int
| main ()
| {
| return opendir ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for readdir
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define readdir to an innocuous variant, in case <limits.h>
declares readdir.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define readdir innocuous_readdir
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char readdir (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef readdir
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char readdir ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_readdir || defined __stub___readdir
| choke me
| #endif
|
| int
| main ()
| {
| return readdir ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for closedir
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define closedir to an innocuous variant, in case <limits.h>
declares closedir.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define closedir innocuous_closedir
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char closedir (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef closedir
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char closedir ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_closedir || defined __stub___closedir
| choke me
| #endif
|
| int
| main ()
| {
| return closedir ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for strchr
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define strchr to an innocuous variant, in case <limits.h> declares strchr.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strchr innocuous_strchr
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strchr (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef strchr
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strchr ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strchr || defined __stub___strchr
| choke me
| #endif
|
| int
| main ()
| {
| return strchr ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for strtod
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define strtod to an innocuous variant, in case <limits.h> declares strtod.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strtod innocuous_strtod
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strtod (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef strtod
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strtod ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strtod || defined __stub___strtod
| choke me
| #endif
|
| int
| main ()
| {
| return strtod ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for assert
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define assert to an innocuous variant, in case <limits.h> declares assert.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define assert innocuous_assert
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char assert (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef assert
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char assert ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_assert || defined __stub___assert
| choke me
| #endif
|
| int
| main ()
| {
| return assert ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for posix_memalign
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define posix_memalign to an innocuous variant, in case <limits.h>
declares posix_memalign.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define posix_memalign innocuous_posix_memalign
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char posix_memalign (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef posix_memalign
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char posix_memalign ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_posix_memalign || defined __stub___posix_memalign
| choke me
| #endif
|
| int
| main ()
| {
| return posix_memalign ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for perror
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define perror to an innocuous variant, in case <limits.h> declares perror.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define perror innocuous_perror
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char perror (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef perror
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char perror ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_perror || defined __stub___perror
| choke me
| #endif
|
| int
| main ()
| {
| return perror ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for strcasestr
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define strcasestr to an innocuous variant, in case <limits.h>
declares strcasestr.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define strcasestr innocuous_strcasestr
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char strcasestr (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef strcasestr
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char strcasestr ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_strcasestr || defined __stub___strcasestr
| choke me
| #endif
|
| int
| main ()
| {
| return strcasestr ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:8992: checking for sbrk
configure:9048: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c  >&5
/usr/include/limits.h(125): catastrophic error: could not open source
file "limits.h"
  # include_next <limits.h>
                           ^

compilation aborted for conftest.c (code 4)
configure:9055: $? = 4
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| /* end confdefs.h.  */
| /* Define sbrk to an innocuous variant, in case <limits.h> declares sbrk.
|    For example, HP-UX 11i <limits.h> declares gettimeofday.  */
| #define sbrk innocuous_sbrk
|
| /* System header to define __stub macros and hopefully few prototypes,
|     which can conflict with char sbrk (); below.
|     Prefer <limits.h> to <assert.h> if __STDC__ is defined, since
|     <limits.h> exists even on freestanding compilers.  */
|
| #ifdef __STDC__
| # include <limits.h>
| #else
| # include <assert.h>
| #endif
|
| #undef sbrk
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char sbrk ();
| /* The GNU C library defines this for functions which it implements
|     to always fail with ENOSYS.  Some functions are actually named
|     something starting with __ and the normal name is an alias.  */
| #if defined __stub_sbrk || defined __stub___sbrk
| choke me
| #endif
|
| int
| main ()
| {
| return sbrk ();
|   ;
|   return 0;
| }
configure:9077: result: no
configure:9091: checking for numa_available in -lnuma
configure:9126: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c
-lnuma   >&5
configure:9133: $? = 0
configure:9154: result: yes
configure:9176: checking if malloc aligns memory to 16 byte boundaries
configure:9230: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c
-lnuma  >&5
configure:9234: $? = 0
configure:9240: ./conftest
configure:9244: $? = 0
configure:9246: result: yes
configure:9269: checking whether the compiler accepts the __m128d type
configure:9296: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:9303: $? = 0
configure:9321: result: yes
configure:9379: checking whether metis is enabled
configure:9381: result: yes
configure:9421: checking whether libnbc is enabled
configure:9446: result: yes
configure:9471: checking whether newuoa is enabled
configure:9483: result: no
configure:9516: checking mpi.h usability
configure:9533: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:9540: $? = 0
configure:9554: result: yes
configure:9558: checking mpi.h presence
configure:9573: /lib/cpp  conftest.c
configure:9580: $? = 0
configure:9594: result: yes
configure:9627: checking for mpi.h
configure:9634: result: yes
configure:9654: checking for MPI_init in
configure:9684: /usr/lib/lam/bin/mpicc -o conftest -g -O2   conftest.c
 -lnuma   >&5
configure:9691: $? = 0
configure:9714: result: yes ()
configure:9819: checking for perl
configure:9837: found /usr/bin/perl
configure:9849: result: /usr/bin/perl
configure:9981: checking for Fortran compiler version
configure:9989: /usr/lib/lam/bin/mpif90 --version >&5
ifort (IFORT) 10.1 20080312
Copyright (C) 1985-2008 Intel Corporation.  All rights reserved.

configure:9993: $? = 0
configure:10000: /usr/lib/lam/bin/mpif90 -v >&5
Version 10.1
configure:10004: $? = 0
configure:10011: /usr/lib/lam/bin/mpif90 -V >&5
Intel(R) Fortran Compiler for applications running on Intel(R) 64,
Version 10.1    Build 20080312
Copyright (C) 1985-2008 Intel Corporation.  All rights reserved.
FOR NON-COMMERCIAL USE ONLY

configure:10015: $? = 0
configure:10023: checking whether we are using the GNU Fortran compiler
configure:10042: /usr/lib/lam/bin/mpif90 -c -O3 -funroll-loops
-ffast-math -ffree-line-length-none -fsecond-underscore  conftest.F
>&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
fortcom: Error: conftest.F, line 3: Syntax error, found
END-OF-STATEMENT when expecting one of: => = . ( : %
       choke me
---------------^
fortcom: Error: conftest.F, line 3: This statement is positioned
incorrectly and/or has syntax errors.
       choke me
---------------^
compilation aborted for conftest.F (code 1)
configure:10049: $? = 1
configure: failed program was:
|       program main
| #ifndef __GNUC__
|        choke me
| #endif
|
|       end
configure:10066: result: no
configure:10072: checking whether /usr/lib/lam/bin/mpif90 accepts -g
configure:10089: /usr/lib/lam/bin/mpif90 -c -g  conftest.f >&5
configure:10096: $? = 0
configure:10112: result: yes
configure:10414: checking for Fortran flag to compile .f90 files
configure:10436: /usr/lib/lam/bin/mpif90 -c -O3 -funroll-loops
-ffast-math -ffree-line-length-none -fsecond-underscore  conftest.f90
>&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:10443: $? = 0
configure:10462: result: none
configure:10561: Using FCFLAGS="-O3 -funroll-loops -ffast-math
-ffree-line-length-none -fsecond-underscore"
configure:10575: checking how to get verbose linking output from
/usr/lib/lam/bin/mpif90
configure:10591: /usr/lib/lam/bin/mpif90 -c -O3 -funroll-loops
-ffast-math -ffree-line-length-none -fsecond-underscore  conftest.f90
>&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:10598: $? = 0
configure:10620: /usr/lib/lam/bin/mpif90 -o conftest -O3
-funroll-loops -ffast-math -ffree-line-length-none -fsecond-underscore
-v conftest.f90 -lnuma
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
Version 10.1
/opt/intel/fce/10.1.015/bin/fortcom    -D__INTEL_COMPILER=1010 -D_MT
-D__ELF__ -D__INTEL_COMPILER_BUILD_DATE=20080312 -D__unix__ -D__unix
-D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__x86_64
-D__x86_64__ -mGLOB_pack_sort_init_list -I. -I/usr/local/include
-I/usr/local/lib -I/opt/intel/mkl/10.0.1.014/include
-I/opt/intel/mkl/10.0.1.014/include
-I/opt/intel/mkl/10.0.1.014/include -I/opt/intel/fce/10.1.015/include
-I/opt/intel/fce/10.1.015/substitute_headers
-I/usr/lib/gcc/x86_64-linux-gnu/4.3.2/include -I/usr/local/include
-I/usr/include -I/usr/lib/gcc/x86_64-linux-gnu/4.3.2/include
"-fp_modspec fp_speculation_FAST" -O3 "-reentrancy threaded"
-mP1OPT_version=1010 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90
-mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector
-mP2OPT_static_promotion -mP1OPT_print_version=FALSE
-mP3OPT_use_mspp_call_convention -mCG_use_gas_got_workaround=F
-mP2OPT_align_option_used=TRUE
"-mGLOB_options_string=-I/usr/local/include -I/usr/local/lib -pthread
-o conftest -O3 -funroll-loops -ffast-math -ffree-line-length-none
-fsecond-underscore -v -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77
-lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil"
-mGLOB_cxx_limited_range=FALSE -mP2OPT_eh_nirvana
-mGLOB_diag_file=/tmp/ifort3rFezV.diag
-mGLOB_as_output_backup_file_name=/tmp/ifortLtGpROas_.s
-mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2
-mGLOB_fp_speculation=GLOB_FP_SPECULATION_FAST
-mGLOB_extended_instructions=0x8 -mP2OPT_subs_out_of_bound=FALSE
-mGLOB_ansi_alias -mIPOPT_ninl_user_level=2 -mIPOPT_args_in_regs=0
-mPGOPTI_value_profile_use=T -mGLOB_opt_level=3 -mIPOPT_activate
-mIPOPT_lite -mP2OPT_hlo_level=3 -mP2OPT_hlo -mPAROPT_par_report=1
-mCG_emit_as_seg_grouping
-mIPOPT_obj_output_file_name=/tmp/ifort3rFezV.o
"-mGLOB_linker_version=(GNU Binutils for Debian) 2.18.0.20080103"
-mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS
-mGLOB_obj_output_file=/tmp/ifort3rFezV.o
-mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN
-mP1OPT_source_file_name=conftest.f90 conftest.f90
ld    /usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64/crt1.o
/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64/crti.o
/usr/lib/gcc/x86_64-linux-gnu/4.3.2/crtbegin.o --eh-frame-hdr
-dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest
/opt/intel/fce/10.1.015/lib/for_main.o /tmp/ifort3rFezV.o -lnuma
-L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl
--export-dynamic -lnsl -lutil -L/opt/intel/mkl/10.0.1.014/lib/em64t
-L/opt/intel/mkl/10.0.1.014/lib/em64t
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -Bstatic
-lifport -lifcoremt -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc
-Bdynamic -lpthread -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl
-lc /usr/lib/gcc/x86_64-linux-gnu/4.3.2/crtend.o
/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64/crtn.o
rm /tmp/ifortJgrAg5libgcc

rm /tmp/ifort8Ttxc0gnudirs

rm /tmp/ifortKCSCVQgas

rm /tmp/ifortLtGpROas_.s

rm /tmp/iforteXeIMMld_v

rm /tmp/ifortFt9iAKldashv

rm /tmp/ifortCkkHJIarg

rm /tmp/ifortjpY81Ignudirs

rm /tmp/ifort3rFezV.o
configure:10689: result: -v
configure:10691: checking for Fortran libraries of /usr/lib/lam/bin/mpif90
configure:10714: /usr/lib/lam/bin/mpif90 -o conftest -O3
-funroll-loops -ffast-math -ffree-line-length-none -fsecond-underscore
-v conftest.f90 -lnuma
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
Version 10.1
/opt/intel/fce/10.1.015/bin/fortcom    -D__INTEL_COMPILER=1010 -D_MT
-D__ELF__ -D__INTEL_COMPILER_BUILD_DATE=20080312 -D__unix__ -D__unix
-D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__x86_64
-D__x86_64__ -mGLOB_pack_sort_init_list -I. -I/usr/local/include
-I/usr/local/lib -I/opt/intel/mkl/10.0.1.014/include
-I/opt/intel/mkl/10.0.1.014/include
-I/opt/intel/mkl/10.0.1.014/include -I/opt/intel/fce/10.1.015/include
-I/opt/intel/fce/10.1.015/substitute_headers
-I/usr/lib/gcc/x86_64-linux-gnu/4.3.2/include -I/usr/local/include
-I/usr/include -I/usr/lib/gcc/x86_64-linux-gnu/4.3.2/include
"-fp_modspec fp_speculation_FAST" -O3 "-reentrancy threaded"
-mP1OPT_version=1010 -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90
-mGLOB_tune_for_fort -mGLOB_use_fort_dope_vector
-mP2OPT_static_promotion -mP1OPT_print_version=FALSE
-mP3OPT_use_mspp_call_convention -mCG_use_gas_got_workaround=F
-mP2OPT_align_option_used=TRUE
"-mGLOB_options_string=-I/usr/local/include -I/usr/local/lib -pthread
-o conftest -O3 -funroll-loops -ffast-math -ffree-line-length-none
-fsecond-underscore -v -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77
-lmpi -lopen-rte -lopen-pal -ldl -Wl,--export-dynamic -lnsl -lutil"
-mGLOB_cxx_limited_range=FALSE -mP2OPT_eh_nirvana
-mGLOB_diag_file=/tmp/ifort9Xy7Na.diag
-mGLOB_as_output_backup_file_name=/tmp/ifortrge6Dbas_.s
-mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2
-mGLOB_fp_speculation=GLOB_FP_SPECULATION_FAST
-mGLOB_extended_instructions=0x8 -mP2OPT_subs_out_of_bound=FALSE
-mGLOB_ansi_alias -mIPOPT_ninl_user_level=2 -mIPOPT_args_in_regs=0
-mPGOPTI_value_profile_use=T -mGLOB_opt_level=3 -mIPOPT_activate
-mIPOPT_lite -mP2OPT_hlo_level=3 -mP2OPT_hlo -mPAROPT_par_report=1
-mCG_emit_as_seg_grouping
-mIPOPT_obj_output_file_name=/tmp/ifort9Xy7Na.o
"-mGLOB_linker_version=(GNU Binutils for Debian) 2.18.0.20080103"
-mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS
-mGLOB_obj_output_file=/tmp/ifort9Xy7Na.o
-mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN
-mP1OPT_source_file_name=conftest.f90 conftest.f90
ld    /usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64/crt1.o
/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64/crti.o
/usr/lib/gcc/x86_64-linux-gnu/4.3.2/crtbegin.o --eh-frame-hdr
-dynamic-linker /lib64/ld-linux-x86-64.so.2 -o conftest
/opt/intel/fce/10.1.015/lib/for_main.o /tmp/ifort9Xy7Na.o -lnuma
-L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl
--export-dynamic -lnsl -lutil -L/opt/intel/mkl/10.0.1.014/lib/em64t
-L/opt/intel/mkl/10.0.1.014/lib/em64t
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -Bstatic
-lifport -lifcoremt -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc
-Bdynamic -lpthread -lc -lgcc_s -lgcc -Bstatic -lirc_s -Bdynamic -ldl
-lc /usr/lib/gcc/x86_64-linux-gnu/4.3.2/crtend.o
/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64/crtn.o
rm /tmp/ifortZ7FFlalibgcc

rm /tmp/ifortIGsrmagnudirs

rm /tmp/ifort8I36gbgas

rm /tmp/ifortrge6Dbas_.s

rm /tmp/ifortyJ5Y2bld_v

rm /tmp/ifort9xitScldashv

rm /tmp/ifortEHtisgarg

rm /tmp/ifortRPi8Wjgnudirs

rm /tmp/ifort9Xy7Na.o
configure:10891: result:  -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77
-lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s
configure:10906: checking for dummy main to link with Fortran libraries
configure:10950: /usr/lib/lam/bin/mpicc -o conftest -g -O2
conftest.c -lnuma   -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi
-lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s >&5
configure:10957: $? = 0
configure:11045: result: none
configure:11083: checking for Fortran name-mangling scheme
configure:11102: /usr/lib/lam/bin/mpif90 -c -O3 -funroll-loops
-ffast-math -ffree-line-length-none -fsecond-underscore  conftest.f90
>&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:11109: $? = 0
configure:11164: /usr/lib/lam/bin/mpicc -o conftest -g -O2
conftest.c cfortran_test.o -lnuma   -lnuma -L/usr/local/lib -lmpi_f90
-lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s >&5
/tmp/iccgpTVAW.o: In function `main':
/home/francesco/octopus/octopus-3.1.0/conftest.c:75: undefined
reference to `foobar'
configure:11171: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| #define HAVE_LIBNUMA 1
| #define HAVE_16_BYTES_ALIGNED_MALLOC 1
| #define HAVE_M128D 1
| #define HAVE_METIS 1
| #define HAVE_LIBNBC 1
| #define HAVE_MPI 1
| /* end confdefs.h.  */
|
| /* Override any GCC internal prototype to avoid an error.
|    Use char because int might match the return type of a GCC
|    builtin and then its argument prototype would still apply.  */
| #ifdef __cplusplus
| extern "C"
| #endif
| char foobar ();
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
| return foobar ();
|   ;
|   return 0;
| }
configure:11164: /usr/lib/lam/bin/mpicc -o conftest -g -O2
conftest.c cfortran_test.o -lnuma   -lnuma -L/usr/local/lib -lmpi_f90
-lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s >&5
configure:11171: $? = 0
configure:11253: /usr/lib/lam/bin/mpicc -o conftest -g -O2
conftest.c cfortran_test.o -lnuma   -lnuma -L/usr/local/lib -lmpi_f90
-lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s >&5
configure:11260: $? = 0
configure:11323: result: lower case, underscore, no extra underscore
configure:11425: checking for flush
configure:11442: /usr/lib/lam/bin/mpif90 -o conftest -O3
-funroll-loops -ffast-math -ffree-line-length-none -fsecond-underscore
  conftest.f90   -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi
-lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s >&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:11449: $? = 0
configure:11479: result: yes
configure:11484: checking for loc
configure:11505: /usr/lib/lam/bin/mpif90 -o conftest -O3
-funroll-loops -ffast-math -ffree-line-length-none -fsecond-underscore
  conftest.f90   -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi
-lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s >&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:11512: $? = 0
configure:11521: result: yes
configure:11544: checking whether the compiler accepts very long lines
configure:11559: /usr/lib/lam/bin/mpif90 -c -O3 -funroll-loops
-ffast-math -ffree-line-length-none -fsecond-underscore  conftest.f90
>&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:11566: $? = 0
configure:11586: result: yes
configure:11591: checking whether the compiler accepts "line-number"
lines cast by the preprocessor
configure:11604: /usr/lib/lam/bin/mpif90 -c -O3 -funroll-loops
-ffast-math -ffree-line-length-none -fsecond-underscore  conftest.f90
>&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:11611: $? = 0
configure:11632: result: yes
configure:11638: checking how to access command line arguments
configure:11660: /usr/lib/lam/bin/mpif90 -o conftest -O3
-funroll-loops -ffast-math -ffree-line-length-none -fsecond-underscore
  conftest.f90   -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi
-lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s >&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:11667: $? = 0
configure:11676: result: fortran 2003
configure:11879: checking for Fortran 2003 c_ptr type
configure:11899: /usr/lib/lam/bin/mpif90 -o conftest -O3
-funroll-loops -ffast-math -ffree-line-length-none -fsecond-underscore
  conftest.f90   -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi
-lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s >&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:11906: $? = 0
configure:11914: result: yes
configure:11937: checking if the Fortran compiler uses malloc
configure:11988: /usr/lib/lam/bin/mpicc -c -g -O2  conftest.c >&5
configure:11994: $? = 0
configure:11997: test -z                           || test ! -s conftest.err
configure:12000: $? = 0
configure:12003: test -s conftest.o
configure:12006: $? = 0
configure:12040: /usr/lib/lam/bin/mpif90 -c -O3 -funroll-loops
-ffast-math -ffree-line-length-none -fsecond-underscore  conftest.f90
>&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:12046: $? = 0
configure:12049: test -z                           || test ! -s conftest.err
configure:12052: $? = 0
configure:12055: test -s conftest.o
configure:12058: $? = 0
configure:12071: /usr/lib/lam/bin/mpif90 -o conftest -O3
-funroll-loops -ffast-math -ffree-line-length-none -fsecond-underscore
                             conftestc.o conftestf.o   -lnuma
-L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl
-lnsl -lutil -L/opt/intel/mkl/10.0.1.014/lib/em64t
-L/opt/intel/fce/10.1.015/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s >&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:12079: $? = 0
configure:12082: test -z                           || test ! -s conftest.err
configure:12085: $? = 0
configure:12088: test -s conftest
configure:12091: $? = 0
configure:12102: ./conftest
./configure: line 12103: 14687 Segmentation fault      ./conftest$ac_exeext
configure:12105: $? = 139
configure:12124: result: no
configure:12130: checking fortran 90 modules inclusion flag
configure:12161: /usr/lib/lam/bin/mpif90 -c -O3 -funroll-loops
-ffast-math -ffree-line-length-none -fsecond-underscore  conftest.f90
>&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:12168: $? = 0
configure:12201: /usr/lib/lam/bin/mpif90 -c -O3 -funroll-loops
-ffast-math -ffree-line-length-none -fsecond-underscore -I tmpdir_0
conftest.f90 >&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:12208: $? = 0
configure:12238: result: -I
configure:12419: checking for sgemm in
-L/opt/acml4.2.0/gfortran64_mp_int64/lib -lblas
configure:12432: /usr/lib/lam/bin/mpif90 -o conftest -O3
-funroll-loops -ffast-math -ffree-line-length-none -fsecond-underscore
  conftest.f90 -L/opt/acml4.2.0/gfortran64_mp_int64/lib -lblas
-lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte
-lopen-pal -ldl -lnsl -lutil -L/opt/intel/mkl/10.0.1.014/lib/em64t
-L/opt/intel/fce/10.1.015/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s  >&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:12439: $? = 0
configure:12462: result: yes (-L/opt/acml4.2.0/gfortran64_mp_int64/lib -lblas)
configure:13381: checking for cheev in
-L/opt/acml4.2.0/gfortran64_mp_int64/lib -llapack
configure:13394: /usr/lib/lam/bin/mpif90 -o conftest -O3
-funroll-loops -ffast-math -ffree-line-length-none -fsecond-underscore
  conftest.f90 -L/opt/acml4.2.0/gfortran64_mp_int64/lib -llapack
-L/opt/acml4.2.0/gfortran64_mp_int64/lib -lblas   -lnuma
-L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte -lopen-pal -ldl
-lnsl -lutil -L/opt/intel/mkl/10.0.1.014/lib/em64t
-L/opt/intel/fce/10.1.015/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s  >&5
ifort: command line warning #10006: ignoring unknown option '-ffast-math'
ifort: command line warning #10006: ignoring unknown option
'-ffree-line-length-none'
ifort: command line warning #10006: ignoring unknown option
'-fsecond-underscore'
configure:13401: $? = 0
configure:13424: result: yes (-L/opt/acml4.2.0/gfortran64_mp_int64/lib -llapack)
configure:13552: checking for gsl-config
configure:13570: found /usr/bin/gsl-config
configure:13583: result: /usr/bin/gsl-config
configure:13592: checking for GSL - version >= 1.9
configure:13702: /usr/lib/lam/bin/mpicc -o conftest -g -O2
-I/usr/include   conftest.c -lnuma  -L/usr/lib -lgsl -lgslcblas -lm
>&5
/usr/lib/libmpi.so: undefined reference to `orte_init_stage2'
/usr/lib/libmpi.so: undefined reference to `orte_hash_table_set_proc'
/usr/lib/libmpi.so: undefined reference to `orte_dss'
/usr/lib/libmpi.so: undefined reference to `opal_progress_mpi_init'
/usr/lib/libmpi.so: undefined reference to `orte_hash_table_get_proc'
/usr/lib/libmpi.so: undefined reference to `orte_data_value_t_class'
/usr/lib/libmpi.so: undefined reference to `orte_gpr_base_selected_component'
/usr/lib/libmpi.so: undefined reference to `orte_ns_name_wildcard'
/usr/lib/libmpi.so: undefined reference to `orte_gpr_subscription_t_class'
/usr/lib/libmpi.so: undefined reference to `orte_system_info'
/usr/lib/libmpi.so: undefined reference to `orte_init_stage1'
/usr/lib/libmpi.so: undefined reference to `orte_app_context_map_t_class'
/usr/lib/libmpi.so: undefined reference to `opal_progress_events'
/usr/lib/libmpi.so: undefined reference to `opal_progress_mpi_enable'
/usr/lib/libmpi.so: undefined reference to `orte_rmgr'
/usr/lib/libmpi.so: undefined reference to `opal_progress_event_decrement'
/usr/lib/libmpi.so: undefined reference to `orte_smr'
/usr/lib/libmpi.so: undefined reference to `orte_gpr_trigger_t_class'
/usr/lib/libmpi.so: undefined reference to `orte_ns'
/usr/lib/libmpi.so: undefined reference to `opal_progress_mpi_disable'
/usr/lib/libmpi.so: undefined reference to `orte_buffer_t_class'
/usr/lib/libmpi.so: undefined reference to `opal_progress_event_increment'
/usr/lib/libmpi.so: undefined reference to `orte_schema'
/usr/lib/libmpi.so: undefined reference to `orte_gpr'
configure:13706: $? = 1
configure: program exited with status 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| #define HAVE_LIBNUMA 1
| #define HAVE_16_BYTES_ALIGNED_MALLOC 1
| #define HAVE_M128D 1
| #define HAVE_METIS 1
| #define HAVE_LIBNBC 1
| #define HAVE_MPI 1
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define HAVE_FLUSH 1
| #define HAVE_FORTRAN_LOC 1
| #define LONG_LINES 1
| #define F90_ACCEPTS_LINE_NUMBERS 1
| #define FC_COMMAND_LINE_ARGUMENTS 2003
| #define F2003_C_PTR 1
| #define MAX_DIM 3
| #define HAVE_BLAS 1
| #define HAVE_LAPACK 1
| /* end confdefs.h.  */
|
| #include <stdio.h>
| #include <stdlib.h>
| #include <string.h>
|
| char* my_strdup (const char *str);
|
| char*
| my_strdup (const char *str)
| {
|   char *new_str;
|
|   if (str)
|     {
|       new_str = (char *)malloc ((strlen (str) + 1) * sizeof(char));
|       strcpy (new_str, str);
|     }
|   else
|     new_str = NULL;
|
|   return new_str;
| }
|
| int main (void)
| {
|   int major = 0, minor = 0, micro = 0;
|   int n;
|   char *tmp_version;
|
|   system ("touch conf.gsltest");
|
|   /* HP/UX 9 (address@hidden) writes to sscanf strings */
|   tmp_version = my_strdup("1.9");
|
|   n = sscanf(tmp_version, "%d.%d.%d", &major, &minor, &micro) ;
|
|   if (n != 2 && n != 3) {
|      printf("%s, bad version string\n", "1.9");
|      exit(1);
|    }
|
|    if ((1 > major) ||
|       ((1 == major) && (11 > minor)) ||
|       ((1 == major) && (11 == minor) && (0 >= micro)))
|     {
|       exit(0);
|     }
|   else
|     {
|       printf("\n*** 'gsl-config --version' returned %d.%d.%d, but
the minimum version\n", 1, 11, 0);
|       printf("*** of GSL required is %d.%d.%d. If gsl-config is
correct, then it is\n", major, minor, micro);
|       printf("*** best to upgrade to the required version.\n");
|       printf("*** If gsl-config was wrong, set the environment
variable GSL_CONFIG\n");
|       printf("*** to point to the correct copy of gsl-config, and
remove the file\n");
|       printf("*** config.cache before re-running configure\n");
|       exit(1);
|     }
| }
|
|
configure:13741: result: no
configure:13786: /usr/lib/lam/bin/mpicc -o conftest -g -O2
-I/usr/include   conftest.c -lnuma  -L/usr/lib -lgsl -lgslcblas -lm
>&5
/usr/lib/libmpi.so: undefined reference to `orte_init_stage2'
/usr/lib/libmpi.so: undefined reference to `orte_hash_table_set_proc'
/usr/lib/libmpi.so: undefined reference to `orte_dss'
/usr/lib/libmpi.so: undefined reference to `opal_progress_mpi_init'
/usr/lib/libmpi.so: undefined reference to `orte_hash_table_get_proc'
/usr/lib/libmpi.so: undefined reference to `orte_data_value_t_class'
/usr/lib/libmpi.so: undefined reference to `orte_gpr_base_selected_component'
/usr/lib/libmpi.so: undefined reference to `orte_ns_name_wildcard'
/usr/lib/libmpi.so: undefined reference to `orte_gpr_subscription_t_class'
/usr/lib/libmpi.so: undefined reference to `orte_system_info'
/usr/lib/libmpi.so: undefined reference to `orte_init_stage1'
/usr/lib/libmpi.so: undefined reference to `orte_app_context_map_t_class'
/usr/lib/libmpi.so: undefined reference to `opal_progress_events'
/usr/lib/libmpi.so: undefined reference to `opal_progress_mpi_enable'
/usr/lib/libmpi.so: undefined reference to `orte_rmgr'
/usr/lib/libmpi.so: undefined reference to `opal_progress_event_decrement'
/usr/lib/libmpi.so: undefined reference to `orte_smr'
/usr/lib/libmpi.so: undefined reference to `orte_gpr_trigger_t_class'
/usr/lib/libmpi.so: undefined reference to `orte_ns'
/usr/lib/libmpi.so: undefined reference to `opal_progress_mpi_disable'
/usr/lib/libmpi.so: undefined reference to `orte_buffer_t_class'
/usr/lib/libmpi.so: undefined reference to `opal_progress_event_increment'
/usr/lib/libmpi.so: undefined reference to `orte_schema'
/usr/lib/libmpi.so: undefined reference to `orte_gpr'
configure:13793: $? = 1
configure: failed program was:
| /* confdefs.h.  */
| #define PACKAGE_NAME "Octopus"
| #define PACKAGE_TARNAME "octopus"
| #define PACKAGE_VERSION "3.1.0"
| #define PACKAGE_STRING "Octopus 3.1.0"
| #define PACKAGE_BUGREPORT "address@hidden"
| #define PACKAGE "octopus"
| #define VERSION "3.1.0"
| #define restrict __restrict
| #define HAVE_BUILTIN_PREFETCH 1
| #define HAVE_DIRENT_H 1
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_FCNTL_H 1
| #define HAVE_FLOAT_H 1
| #define HAVE_LOCALE_H 1
| #define HAVE_MALLOC_H 1
| #define HAVE_STDDEF_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_SYS_IOCTL_H 1
| #define HAVE_SYS_TIME_H 1
| #define HAVE_TERMIOS_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_SIGNAL_H 1
| #define HAVE_ERRNO_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_EMMINTRIN_H 1
| #define HAVE_ALLOCA_H 1
| #define HAVE_ALLOCA 1
| #define TIME_WITH_SYS_TIME 1
| #define SIZEOF_VOIDP 8
| #define HAVE_UINT32_T 1
| #define HAVE_UINT64_T 1
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_UNSIGNED_LONG 8
| #define SIZEOF_UNSIGNED_LONG_LONG 8
| #define GETPGRP_VOID 1
| #define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
| #define HAVE_LIBNUMA 1
| #define HAVE_16_BYTES_ALIGNED_MALLOC 1
| #define HAVE_M128D 1
| #define HAVE_METIS 1
| #define HAVE_LIBNBC 1
| #define HAVE_MPI 1
| #define FC_FUNC(name,NAME) name ## _
| #define FC_FUNC_(name,NAME) name ## _
| #define HAVE_FLUSH 1
| #define HAVE_FORTRAN_LOC 1
| #define LONG_LINES 1
| #define F90_ACCEPTS_LINE_NUMBERS 1
| #define FC_COMMAND_LINE_ARGUMENTS 2003
| #define F2003_C_PTR 1
| #define MAX_DIM 3
| #define HAVE_BLAS 1
| #define HAVE_LAPACK 1
| /* end confdefs.h.  */
|
| #include <stdio.h>
|
| #ifdef FC_DUMMY_MAIN
| #ifndef FC_DUMMY_MAIN_EQ_F77
| #  ifdef __cplusplus
|      extern "C"
| #  endif
|    int FC_DUMMY_MAIN() { return 1; }
| #endif
| #endif
| int
| main ()
| {
|  return 0;
|   ;
|   return 0;
| }
configure:13829: error: could not find required gsl library

## ---------------- ##
## Cache variables. ##
## ---------------- ##

ac_cv_build=x86_64-unknown-linux-gnu
ac_cv_build_perl=yes
ac_cv_c_compiler_gnu=yes
ac_cv_c_const=yes
ac_cv_c_inline=inline
ac_cv_c_restrict=__restrict
ac_cv_env_CCASFLAGS_set=
ac_cv_env_CCASFLAGS_value=
ac_cv_env_CCAS_set=
ac_cv_env_CCAS_value=
ac_cv_env_CC_set=set
ac_cv_env_CC_value=/usr/lib/lam/bin/mpicc
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_FCFLAGS_set=set
ac_cv_env_FCFLAGS_value='-O3 -funroll-loops -ffast-math
-ffree-line-length-none -fsecond-underscore'
ac_cv_env_FC_set=set
ac_cv_env_FC_value=/usr/lib/lam/bin/mpif90
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_YACC_set=
ac_cv_env_YACC_value=
ac_cv_env_YFLAGS_set=
ac_cv_env_YFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_fc_compiler_gnu=no
ac_cv_fc_dummy_main=none
ac_cv_fc_libs=' -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi
-lopen-rte -lopen-pal -ldl -lnsl -lutil
-L/opt/intel/mkl/10.0.1.014/lib/em64t -L/opt/intel/fce/10.1.015/lib
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s'
ac_cv_fc_mangling='lower case, underscore, no extra underscore'
ac_cv_fc_srcext_f90=none
ac_cv_fortran_dummy_main=none
ac_cv_func_alloca_works=yes
ac_cv_func_alphasort=no
ac_cv_func_assert=no
ac_cv_func_closedir=no
ac_cv_func_getcwd=no
ac_cv_func_getpgrp_void=yes
ac_cv_func_gettimeofday=no
ac_cv_func_lstat_dereferences_slashed_symlink=yes
ac_cv_func_malloc=no
ac_cv_func_mkdir=no
ac_cv_func_opendir=no
ac_cv_func_perror=no
ac_cv_func_posix_memalign=no
ac_cv_func_pow=no
ac_cv_func_readdir=no
ac_cv_func_realloc=no
ac_cv_func_sbrk=no
ac_cv_func_scandir=no
ac_cv_func_setvbuf_reversed=no
ac_cv_func_sigaction=no
ac_cv_func_sqrt=no
ac_cv_func_stat_empty_string_bug=no
ac_cv_func_strcasecmp=no
ac_cv_func_strcasestr=no
ac_cv_func_strchr=no
ac_cv_func_strdup=no
ac_cv_func_strerror=no
ac_cv_func_strncasecmp=no
ac_cv_func_strndup=no
ac_cv_func_strtod=no
ac_cv_func_tcgetpgrp=no
ac_cv_func_uname=no
ac_cv_func_vprintf=no
ac_cv_header_dirent_dirent_h=yes
ac_cv_header_emmintrin_h=yes
ac_cv_header_errno_h=yes
ac_cv_header_fcntl_h=yes
ac_cv_header_float_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_locale_h=yes
ac_cv_header_malloc_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_mpi_h=yes
ac_cv_header_signal_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stddef_h=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_ioctl_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_time_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_termios_h=yes
ac_cv_header_time=yes
ac_cv_header_unistd_h=yes
ac_cv_header_xmmintrin_h=yes
ac_cv_host=x86_64-unknown-linux-gnu
ac_cv_lib_numa_numa_available=yes
ac_cv_objext=o
ac_cv_path_EGREP='/bin/grep -E'
ac_cv_path_GREP=/bin/grep
ac_cv_path_GSL_CONFIG=/usr/bin/gsl-config
ac_cv_path_PERL=/usr/bin/perl
ac_cv_path_install='/usr/bin/install -c'
ac_cv_path_mkdir=/bin/mkdir
ac_cv_prog_AWK=mawk
ac_cv_prog_CPP=/lib/cpp
ac_cv_prog_YACC='bison -y'
ac_cv_prog_ac_ct_CC=/usr/lib/lam/bin/mpicc
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_fc_g=yes
ac_cv_prog_fc_v=-v
ac_cv_prog_gcc_traditional=no
ac_cv_prog_make_make_set=yes
ac_cv_search_opendir='none required'
ac_cv_sizeof_unsigned_int=4
ac_cv_sizeof_unsigned_long=8
ac_cv_sizeof_unsigned_long_long=8
ac_cv_sizeof_voidp=8
ac_cv_type_pid_t=yes
ac_cv_type_size_t=yes
ac_cv_type_uint32_t=yes
ac_cv_type_uint64_t=yes
ac_cv_working_alloca_h=yes
am_cv_CCAS_dependencies_compiler_type=gcc3
am_cv_CC_dependencies_compiler_type=gcc3

## ----------------- ##
## Output variables. ##
## ----------------- ##

ACLOCAL='${SHELL}
/home/francesco/octopus/octopus-3.1.0/build-aux/missing --run
aclocal-1.10'
ALLOCA=''
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='${SHELL}
/home/francesco/octopus/octopus-3.1.0/build-aux/missing --run tar'
AUTOCONF='${SHELL}
/home/francesco/octopus/octopus-3.1.0/build-aux/missing --run
autoconf'
AUTOHEADER='${SHELL}
/home/francesco/octopus/octopus-3.1.0/build-aux/missing --run
autoheader'
AUTOMAKE='${SHELL}
/home/francesco/octopus/octopus-3.1.0/build-aux/missing --run
automake-1.10'
AWK='mawk'
CC='/usr/lib/lam/bin/mpicc'
CCAS='/usr/lib/lam/bin/mpicc'
CCASDEPMODE='depmode=gcc3'
CCASFLAGS='-g -O2'
CCDEPMODE='depmode=gcc3'
CFLAGS='-g -O2'
COMPILE_LIBNBC_FALSE='#'
COMPILE_LIBNBC_TRUE=''
COMPILE_METIS_FALSE='#'
COMPILE_METIS_TRUE=''
COMPILE_NEWUOA_FALSE=''
COMPILE_NEWUOA_TRUE='#'
COMPILE_ZOLTAN_FALSE='#'
COMPILE_ZOLTAN_TRUE=''
CPP='/lib/cpp'
CPPFLAGS=''
CYGPATH_W='echo'
DEBUG=''
DEFS=''
DEPDIR='.deps'
ECHO_C=''
ECHO_N='-n'
ECHO_T=''
EGREP='/bin/grep -E'
ENABLE_PERL_FALSE='#'
ENABLE_PERL_TRUE=''
EXEEXT='_mpi'
F90_ACCEPTS_LINE_NUMBERS='yes'
F90_MODULE_FLAG='-I '
FC='/usr/lib/lam/bin/mpif90'
FCCPP='/lib/cpp -C -ansi'
FCEXTRALIBS=''
FCFLAGS='-O3 -funroll-loops -ffast-math -ffree-line-length-none
-fsecond-underscore'
FCFLAGS_NETCDF=''
FCFLAGS_f90=''
FCLIBS=' -lnuma -L/usr/local/lib -lmpi_f90 -lmpi_f77 -lmpi -lopen-rte
-lopen-pal -ldl -lnsl -lutil -L/opt/intel/mkl/10.0.1.014/lib/em64t
-L/opt/intel/fce/10.1.015/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/
-L/usr/lib/gcc/x86_64-linux-gnu/4.3.2/../../../../lib64 -lifport
-lifcoremt -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s'
GDLIB_CONFIG=''
GD_CFLAGS=''
GD_LIBS=''
GREP='/bin/grep'
GSL_CFLAGS='-I/usr/include'
GSL_CONFIG='/usr/bin/gsl-config'
GSL_LIBS='-L/usr/lib -lgsl -lgslcblas -lm'
INSTALL_DATA='${INSTALL} -m 644'
INSTALL_PROGRAM='${INSTALL}'
INSTALL_SCRIPT='${INSTALL}'
INSTALL_STRIP_PROGRAM='$(install_sh) -c -s'
LDFLAGS=''
LIBOBJS=''
LIBS='-lnuma '
LIBS_BLAS='-L/opt/acml4.2.0/gfortran64_mp_int64/lib -lblas'
LIBS_FFT=''
LIBS_LAPACK='-L/opt/acml4.2.0/gfortran64_mp_int64/lib -llapack'
LIBS_MPI=''
LIBS_NETCDF=''
LIBS_SPARSKIT=''
LINK=''
LN_S='ln -s'
LONG_LINES='yes'
LTLIBOBJS=''
MAKEINFO='${SHELL}
/home/francesco/octopus/octopus-3.1.0/build-aux/missing --run
makeinfo'
MKDIR_P='/bin/mkdir -p'
OBJEXT='o'
PACKAGE='octopus'
PACKAGE_BUGREPORT='address@hidden'
PACKAGE_NAME='Octopus'
PACKAGE_STRING='Octopus 3.1.0'
PACKAGE_TARNAME='octopus'
PACKAGE_VERSION='3.1.0'
PATH_SEPARATOR=':'
PERL='/usr/bin/perl'
RANLIB='ranlib'
SET_MAKE=''
SHELL='/bin/sh'
STRIP=''
UTILITY_PROGRAMS=''
VERSION='3.1.0'
YACC='bison -y'
YFLAGS=''
ac_ct_CC='/usr/lib/lam/bin/mpicc'
ac_ct_FC=''
am__fastdepCCAS_FALSE='#'
am__fastdepCCAS_TRUE=''
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__include='include'
am__isrc=''
am__leading_dot='.'
am__quote=''
am__tar='${AMTAR} chof - "$$tardir"'
am__untar='${AMTAR} xf -'
bindir='${exec_prefix}/bin'
build='x86_64-unknown-linux-gnu'
build_alias=''
build_cpu='x86_64'
build_os='linux-gnu'
build_vendor='unknown'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
exec_prefix='NONE'
host='x86_64-unknown-linux-gnu'
host_alias=''
host_cpu='x86_64'
host_os='linux-gnu'
host_vendor='unknown'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='$(SHELL) /home/francesco/octopus/octopus-3.1.0/build-aux/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='/bin/mkdir -p'
oldincludedir='/usr/include'
pdfdir='${docdir}'
prefix='NONE'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=''
sysconfdir='${prefix}/etc'
target_alias=''

## ----------- ##
## confdefs.h. ##
## ----------- ##

#define PACKAGE_NAME "Octopus"
#define PACKAGE_TARNAME "octopus"
#define PACKAGE_VERSION "3.1.0"
#define PACKAGE_STRING "Octopus 3.1.0"
#define PACKAGE_BUGREPORT "address@hidden"
#define PACKAGE "octopus"
#define VERSION "3.1.0"
#define restrict __restrict
#define HAVE_BUILTIN_PREFETCH 1
#define HAVE_DIRENT_H 1
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_FCNTL_H 1
#define HAVE_FLOAT_H 1
#define HAVE_LOCALE_H 1
#define HAVE_MALLOC_H 1
#define HAVE_STDDEF_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_STRINGS_H 1
#define HAVE_SYS_IOCTL_H 1
#define HAVE_SYS_TIME_H 1
#define HAVE_TERMIOS_H 1
#define HAVE_UNISTD_H 1
#define HAVE_SIGNAL_H 1
#define HAVE_ERRNO_H 1
#define HAVE_XMMINTRIN_H 1
#define HAVE_EMMINTRIN_H 1
#define HAVE_ALLOCA_H 1
#define HAVE_ALLOCA 1
#define TIME_WITH_SYS_TIME 1
#define SIZEOF_VOIDP 8
#define HAVE_UINT32_T 1
#define HAVE_UINT64_T 1
#define SIZEOF_UNSIGNED_INT 4
#define SIZEOF_UNSIGNED_LONG 8
#define SIZEOF_UNSIGNED_LONG_LONG 8
#define GETPGRP_VOID 1
#define LSTAT_FOLLOWS_SLASHED_SYMLINK 1
#define HAVE_LIBNUMA 1
#define HAVE_16_BYTES_ALIGNED_MALLOC 1
#define HAVE_M128D 1
#define HAVE_METIS 1
#define HAVE_LIBNBC 1
#define HAVE_MPI 1
#define FC_FUNC(name,NAME) name ## _
#define FC_FUNC_(name,NAME) name ## _
#define HAVE_FLUSH 1
#define HAVE_FORTRAN_LOC 1
#define LONG_LINES 1
#define F90_ACCEPTS_LINE_NUMBERS 1
#define FC_COMMAND_LINE_ARGUMENTS 2003
#define F2003_C_PTR 1
#define MAX_DIM 3
#define HAVE_BLAS 1
#define HAVE_LAPACK 1

configure: exit 1
===========================




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