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[bug#47156] [PATCH 01/10] gnu: r-grohmm: Move to (gnu packages bioconduc
From: |
zimoun |
Subject: |
[bug#47156] [PATCH 01/10] gnu: r-grohmm: Move to (gnu packages bioconductor). |
Date: |
Mon, 15 Mar 2021 14:01:26 +0100 |
* gnu/packages/bioinformatics.scm (r-grohmm): Move from here...
* gnu/packages/bioconductor.scm (r-grohmm): ...to here.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 27 ---------------------------
2 files changed, 27 insertions(+), 27 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 4f8e0562b1..55f718d5ab 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8511,6 +8511,33 @@ and manages a local cache of files retrieved enabling
quick and reproducible
access.")
(license license:artistic2.0)))
+(define-public r-grohmm
+ (package
+ (name "r-grohmm")
+ (version "1.24.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "groHMM" version))
+ (sha256
+ (base32
+ "08pap9wsaxl4jjlc1py0rc019gmi6daa0f9cr3ih1d97wybncanx"))))
+ (properties `((upstream-name . "groHMM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-mass" ,r-mass)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://github.com/Kraus-Lab/groHMM")
+ (synopsis "GRO-seq analysis pipeline")
+ (description
+ "This package provides a pipeline for the analysis of GRO-seq data.")
+ (license license:gpl3+)))
+
(define-public r-multiassayexperiment
(package
(name "r-multiassayexperiment")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b0736d32e4..20a9385604 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7387,33 +7387,6 @@ includes software to
")
(license license:cc0))))
-(define-public r-grohmm
- (package
- (name "r-grohmm")
- (version "1.24.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "groHMM" version))
- (sha256
- (base32
- "08pap9wsaxl4jjlc1py0rc019gmi6daa0f9cr3ih1d97wybncanx"))))
- (properties `((upstream-name . "groHMM")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicalignments" ,r-genomicalignments)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-mass" ,r-mass)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-s4vectors" ,r-s4vectors)))
- (home-page "https://github.com/Kraus-Lab/groHMM")
- (synopsis "GRO-seq analysis pipeline")
- (description
- "This package provides a pipeline for the analysis of GRO-seq data.")
- (license license:gpl3+)))
-
(define-public vsearch
(package
(name "vsearch")
base-commit: 1ed435bf394eee1a6cd9c354efb405920c212f0e
--
2.30.1
- [bug#47156] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 01/10] gnu: r-grohmm: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#47156] [PATCH 02/10] gnu: r-biocviews: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 05/10] gnu: r-s4vectors: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 03/10] gnu: r-biocstyle: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 06/10] gnu: r-iranges: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 04/10] gnu: r-bioccheck: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 08/10] gnu: r-genomeinfodb: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 07/10] gnu: r-genomeinfodbdata: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 09/10] gnu: r-edger: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- [bug#47156] [PATCH 10/10] gnu: r-variantannotation: Move to (gnu packages bioconductor)., zimoun, 2021/03/15
- bug#47156: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/03/15