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bug#30985: [PATCH] gnu: Add delly.
From: |
Leo Famulari |
Subject: |
bug#30985: [PATCH] gnu: Add delly. |
Date: |
Fri, 30 Mar 2018 10:51:16 -0400 |
User-agent: |
Mutt/1.9.3 (2018-01-21) |
On Thu, Mar 29, 2018 at 03:02:12PM +0200, Roel Janssen wrote:
> Dear Guix,
>
> I'd like to add Delly. Note that there's a newer version (0.7.8) out.
> We extensively tested 0.7.7 in our research lab. Building 0.7.8 failed
> because the patch for unbundling dependencies no longer applies to this
> new version.
>
> So I'd like to add 0.7.7 first, and do more testing/patching on 0.7.8
> before we update it in Guix.
Okay!
> From b333dd0f027e8dfdcd67bc96ab94f6fc79cf0854 Mon Sep 17 00:00:00 2001
> From: Roel Janssen <address@hidden>
> Date: Thu, 29 Mar 2018 14:58:15 +0200
> Subject: [PATCH] gnu: Add delly.
>
> * gnu/packages/bioinformatics.scm (delly): New variable.
> * gnu/packages/patches/delly-use-system-libraries.patch: New file.
> * gnu/local.mk: Include delly-use-system-libraries.patch.
Pushed as fdc306879b388b08be63ead6209473c184daa1e0 with these changes:
> + (patches
> + (list
> + (search-patch "delly-use-system-libraries.patch")))))
I changed this to use search-patches...
> + (inputs
> + `(("boost" ,boost)
> + ("htslib" ,htslib)
> + ("zlib" ,zlib)
> + ("bzip2" ,bzip2)))
> + (native-inputs
> + `(("python" ,python-2)))
> + (inputs
> + `(("boost" ,boost)
> + ("htslib" ,htslib)
> + ("zlib" ,zlib)
> + ("bzip2" ,bzip2)))
... and removed the extra part.
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