[bug#30152] [PATCH 1/4] gnu: Add libgff.

[Ricardo Wurmus]

* gnu/packages/bioinformatics.scm (libgff): New variable.
---
 gnu/packages/bioinformatics.scm | 25 ++++++++++++++++++++++++-
 1 file changed, 24 insertions(+), 1 deletion(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index f0bfa9300..f5e32ffa4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1,5 +1,5 @@
 ;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015, 2016, 2017 Ricardo Wurmus <address@hidden>
+;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus <address@hidden>
 ;;; Copyright © 2015, 2016, 2017 Ben Woodcroft <address@hidden>
 ;;; Copyright © 2015, 2016 Pjotr Prins <address@hidden>
 ;;; Copyright © 2015 Andreas Enge <address@hidden>
@@ -11109,3 +11109,26 @@ for alignment.  Pseudoalignment of reads preserves the 
key information needed
 for quantification, and kallisto is therefore not only fast, but also as
 accurate as existing quantification tools.")
     (license license:bsd-2)))
+
+(define-public libgff
+  (package
+    (name "libgff")
+    (version "1.0")
+    (source (origin
+              (method url-fetch)
+              (uri (string-append
+                    "https://github.com/Kingsford-Group/";
+                    "libgff/archive/v" version ".tar.gz"))
+              (file-name (string-append name "-" version ".tar.gz"))
+              (sha256
+               (base32
+                "0vc4nxyhlm6g9vvmx5l4lfs5pnvixsv1hiiy4kddf2y3p6jna8ls"))))
+    (build-system cmake-build-system)
+    (arguments `(#:tests? #f))          ; no tests included
+    (home-page "https://github.com/Kingsford-Group/libgff";)
+    (synopsis "Parser library for reading/writing GFF files")
+    (description "This is a simple \"libraryfication\" of the GFF/GTF parsing
+code that is used in the Cufflinks codebase.  The goal of this library is to
+provide this functionality without the necessity of drawing in a heavy-weight
+dependency like SeqAn.")
+    (license (license:x11-style "http://www.boost.org/LICENSE_1_0.txt";))))
-- 
2.15.0