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151/290: gnu: bedtools: Update to 2.31.1; fixes build with gcc-14.
From: |
guix-commits |
Subject: |
151/290: gnu: bedtools: Update to 2.31.1; fixes build with gcc-14. |
Date: |
Mon, 31 Mar 2025 05:07:03 -0400 (EDT) |
andreas pushed a commit to branch core-packages-team
in repository guix.
commit 1fc28302227bc50c2e94d4bbfa09a4de48f2ecd7
Author: Janneke Nieuwenhuizen <janneke@gnu.org>
AuthorDate: Fri Jan 3 10:02:22 2025 +0100
gnu: bedtools: Update to 2.31.1; fixes build with gcc-14.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.31.1.
Change-Id: I1576952e19449ad92aee3690c97d3f406df95321
---
gnu/packages/bioinformatics.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0825fbb6ef..d42e5cebeb 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -27,6 +27,7 @@
;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
;;; Copyright © 2024 Alexis Simon <alexis.simon@runbox.com>
;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
+;;; Copyright © 2025 Janneke Nieuwenhuizen <janneke@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -452,7 +453,7 @@ computational cluster.")
(define-public bedtools
(package
(name "bedtools")
- (version "2.30.0")
+ (version "2.31.1")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/arq5x/bedtools2/releases/"
@@ -460,7 +461,7 @@ computational cluster.")
"bedtools-" version ".tar.gz"))
(sha256
(base32
- "1f2hh79l7dn147c2xyfgf5wfjvlqfw32kjfnnh2n1qy6rpzx2fik"))))
+ "15rbfg776pcjxqrsa22dk7sdlmx1lijh3jhap04f1cbr4866czpw"))))
(build-system gnu-build-system)
(arguments
(list
- 128/290: gnu: icu4c: Disable some tests for x86-32., (continued)
- 128/290: gnu: icu4c: Disable some tests for x86-32., guix-commits, 2025/03/31
- 127/290: gnu: lpsolve: Fix build with gcc-14., guix-commits, 2025/03/31
- 131/290: gnu: mpdscribble: Update to 0.25; fixes build with gcc-14., guix-commits, 2025/03/31
- 129/290: gnu: Add icu4c-71., guix-commits, 2025/03/31
- 134/290: gnu: openldap-for-linphone: Fix build with gcc-14., guix-commits, 2025/03/31
- 139/290: gnu: discount: Update to 2.2.7d and fix build with gcc-14., guix-commits, 2025/03/31
- 135/290: gnu: mbedtls-lts: Update to 2.28.9 and fix build with gcc-14., guix-commits, 2025/03/31
- 142/290: gnu: podofo: Fix build with gcc-14., guix-commits, 2025/03/31
- 143/290: gnu: tbb-2020.3: Fix build with gcc-14., guix-commits, 2025/03/31
- 148/290: gnu: zeromq: Update to 4.3.5; fixes build with gcc-14., guix-commits, 2025/03/31
- 151/290: gnu: bedtools: Update to 2.31.1; fixes build with gcc-14.,
guix-commits <=
- 155/290: gnu: portmidi: Fix build with gcc-14., guix-commits, 2025/03/31
- 157/290: gnu: uwsgi: Update to 2.0.28; fixes build with gcc-14., guix-commits, 2025/03/31
- 162/290: Revert "gnu: r-rcppparallel: Fix build with gcc-14.", guix-commits, 2025/03/31
- 167/290: gnu: gf2x: Fix build with gcc-14., guix-commits, 2025/03/31
- 170/290: gnu: perl-tk: Fix build with gcc-14., guix-commits, 2025/03/31
- 172/290: gnu: perl-tk: Build with gcc-12., guix-commits, 2025/03/31
- 174/290: gnu: aria2: Fix build., guix-commits, 2025/03/31
- 175/290: gnu: icu4c: Revert to 71., guix-commits, 2025/03/31
- 177/290: gnu: ghc-8.0.2: Build with gcc-13., guix-commits, 2025/03/31
- 181/290: gnu: Add gettext-minimal-0.21., guix-commits, 2025/03/31