04/10: gnu: Add go-github-com-biogo-store.

[guix-commits]

sharlatan pushed a commit to branch go-team
in repository guix.

commit 1b83198655db556316ce29933504a8e5476bb3e6
Author: Sharlatan Hellseher <sharlatanus@gmail.com>
AuthorDate: Wed Jan 22 21:00:59 2025 +0000

    gnu: Add go-github-com-biogo-store.
    
    This change merges all extracted subdirs under the same variable as it's
    distributed in single module according to project's go.mod.
    
    * gnu/packages/bioinformatics.scm (go-github-com-biogo-store-kdtree,
    go-github-com-biogo-store-llrb, go-github-com-biogo-store-step):
    Delete variables.
    
    (go-github-com-biogo-store): New variable.
    [arguments] <skip-build?>: No go files in project's root.
    <import-path>: Set as seen in go.mod.
    
    (go-github-com-biogo-biogo) [propagated-inputs]: Remove
    go-github-com-biogo-store-kdtree, go-github-com-biogo-store-llrb, and
    go-github-com-biogo-store-step. Add go-github-com-biogo-store.
    
    Change-Id: I1db4efea31fc7f1f5e96b21e874a523cf631f370
---
 gnu/packages/bioinformatics.scm | 50 +++++------------------------------------
 1 file changed, 6 insertions(+), 44 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 170651d991..f778d71fd2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -24338,9 +24338,9 @@ for nanopore cDNA, native RNA, and PacBio sequencing 
reads.")
 functions.")
     (license license:bsd-3)))
 
-(define-public go-github-com-biogo-store-interval
+(define-public go-github-com-biogo-store
   (package
-    (name "go-github-com-biogo-store-interval")
+    (name "go-github-com-biogo-store")
     (version "0.0.0-20201120204734-aad293a2328f")
     (source (origin
               (method git-fetch)
@@ -24353,8 +24353,9 @@ functions.")
                 "0skizrp1j6vgbl0g1kmh73picagqlvwckaqs0gkl6rai5lckxj8a"))))
     (build-system go-build-system)
     (arguments
-     '(#:import-path "github.com/biogo/store/interval"
-       #:unpack-path "github.com/biogo/store"))
+     (list
+      #:skip-build? #t
+      #:import-path "github.com/biogo/store"))
     (propagated-inputs
      (list go-gopkg-in-check-v1
            go-github-com-kr-pretty))
@@ -24365,42 +24366,6 @@ functions.")
 useful for bioinformatic analysis.")
     (license license:bsd-3)))
 
-(define-public go-github-com-biogo-store-kdtree
-  (package
-    (inherit go-github-com-biogo-store-interval)
-    (name "go-github-com-biogo-store-kdtree")
-    (arguments
-     '(#:import-path "github.com/biogo/store/kdtree"
-       #:unpack-path "github.com/biogo/store"))
-    (propagated-inputs
-     (list go-gopkg-in-check-v1
-           go-github-com-kr-pretty))
-    (synopsis "kdtree store type for biogo")))
-
-(define-public go-github-com-biogo-store-llrb
-  (package
-    (inherit go-github-com-biogo-store-interval)
-    (name "go-github-com-biogo-store-llrb")
-    (arguments
-     '(#:import-path "github.com/biogo/store/llrb"
-       #:unpack-path "github.com/biogo/store"))
-    (propagated-inputs
-     (list go-gopkg-in-check-v1
-           go-github-com-kr-pretty))
-    (synopsis "LLRB store for biogo")))
-
-(define-public go-github-com-biogo-store-step
-  (package
-    (inherit go-github-com-biogo-store-interval)
-    (name "go-github-com-biogo-store-step")
-    (arguments
-     '(#:import-path "github.com/biogo/store/step"
-       #:unpack-path "github.com/biogo/store"))
-    (propagated-inputs
-     (list go-gopkg-in-check-v1
-           go-github-com-kr-pretty))
-    (synopsis "Step store for biogo")))
-
 (define-public go-github-com-biogo-hts
   (package
     (name "go-github-com-biogo-hts")
@@ -24451,10 +24416,7 @@ CSIv1, CSIv2 and FAI files.")
      '(#:import-path "github.com/biogo/biogo"))
     (propagated-inputs
      (list go-gopkg-in-check-v1
-           go-github-com-biogo-store-interval
-           go-github-com-biogo-store-kdtree
-           go-github-com-biogo-store-llrb
-           go-github-com-biogo-store-step
+           go-github-com-biogo-store
            go-github-com-biogo-hts
            go-github-com-biogo-graph))
     (home-page "https://github.com/biogo/biogo";)