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159/216: gnu: bedtools: Update to 2.31.1; fixes build with gcc-14.
From: |
guix-commits |
Subject: |
159/216: gnu: bedtools: Update to 2.31.1; fixes build with gcc-14. |
Date: |
Sat, 4 Jan 2025 07:27:35 -0500 (EST) |
janneke pushed a commit to branch core-packages-team
in repository guix.
commit 383cf5307f994de80ff82325bf4eb5f1640c2e71
Author: Janneke Nieuwenhuizen <janneke@gnu.org>
AuthorDate: Fri Jan 3 10:02:22 2025 +0100
gnu: bedtools: Update to 2.31.1; fixes build with gcc-14.
* gnu/packages/bioinformatics.scm (bedtools): Update to 2.31.1.
Change-Id: I1576952e19449ad92aee3690c97d3f406df95321
---
gnu/packages/bioinformatics.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5c118aed07..8f37d08f00 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -27,6 +27,7 @@
;;; Copyright © 2022 Antero Mejr <antero@mailbox.org>
;;; Copyright © 2024 Alexis Simon <alexis.simon@runbox.com>
;;; Copyright © 2024 Spencer King <spencer.king@geneoscopy.com>
+;;; Copyright © 2024 Janneke Nieuwenhuizen <janneke@gnu.org>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -448,7 +449,7 @@ computational cluster.")
(define-public bedtools
(package
(name "bedtools")
- (version "2.30.0")
+ (version "2.31.1")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/arq5x/bedtools2/releases/"
@@ -456,7 +457,7 @@ computational cluster.")
"bedtools-" version ".tar.gz"))
(sha256
(base32
- "1f2hh79l7dn147c2xyfgf5wfjvlqfw32kjfnnh2n1qy6rpzx2fik"))))
+ "15rbfg776pcjxqrsa22dk7sdlmx1lijh3jhap04f1cbr4866czpw"))))
(build-system gnu-build-system)
(arguments
(list
- 121/216: gnu: openexr: Update to 3.3.2; fixes build with gcc-14., (continued)
- 121/216: gnu: openexr: Update to 3.3.2; fixes build with gcc-14., guix-commits, 2025/01/04
- 130/216: gnu: zile: Fix build with gcc-14., guix-commits, 2025/01/04
- 128/216: gnu: llvm-12: Fix build with gcc-14., guix-commits, 2025/01/04
- 88/216: gnu: libcddb: Fix build with gcc-14., guix-commits, 2025/01/04
- 136/216: gnu: Add icu4c-71., guix-commits, 2025/01/04
- 141/216: gnu: openldap-for-linphone: Fix build with gcc-14., guix-commits, 2025/01/04
- 139/216: gnu: boost-for-mysql: Fix build with gcc-14., guix-commits, 2025/01/04
- 148/216: gnu: tbb: Fix build with gcc-14., guix-commits, 2025/01/04
- 156/216: gnu: zeromq: Update to 4.3.5; fixes build with gcc-14., guix-commits, 2025/01/04
- 150/216: gnu: fmt: Update to 11.1.1; fixes build with gcc-14., guix-commits, 2025/01/04
- 159/216: gnu: bedtools: Update to 2.31.1; fixes build with gcc-14.,
guix-commits <=
- 180/216: gnu: perl-tk: Fix build with gcc-14., guix-commits, 2025/01/04
- 174/216: gnu: python-datrie: Fix build with gcc-14., guix-commits, 2025/01/04
- 186/216: gnu: python-beniget: Update to 0.4.2.post1., guix-commits, 2025/01/04
- 192/216: gnu: ghc-8.4.4: Build with gcc-13., guix-commits, 2025/01/04
- 208/216: gnu: ath9k-firmware: Remove CMAKE_SYSTEM_NAME override., guix-commits, 2025/01/04
- 198/216: gnu: autofs: Update to 5.1.9 and fix build with gcc-14., guix-commits, 2025/01/04
- 207/216: guix: build-system: cmake: Rework cross compilation., guix-commits, 2025/01/04
- 210/216: gnu: clang-runtime: Remove gcc-12, 13, 14 from native-ipnuts., guix-commits, 2025/01/04
- 214/216: gnu: clang-runtime-19: Build with gcc-14., guix-commits, 2025/01/04
- 105/216: gnu: sdl2-2.0.14: Fix build with gcc-14., guix-commits, 2025/01/04