09/31: gnu: r-ggcyto: Add missing inputs.

[guix-commits]

rekado pushed a commit to branch r-team
in repository guix.

commit e541d9b6263ddb7e4cd87881965743e4213a5479
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Nov 28 10:58:00 2024 +0100

    gnu: r-ggcyto: Add missing inputs.
    
    * gnu/packages/bioconductor.scm (r-ggcyto)[native-inputs]: Add
    r-flowworkspacedata, r-opencyto, and r-vdiffr.
    [properties]: Tell updater to add r-flowworkspacedata and ignore 
r-flowstats.
    
    Change-Id: If281e4b930f99e18ccbd07fed7028ba932496c3c
---
 gnu/packages/bioconductor.scm | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 304407035c..c40febaa73 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -20258,7 +20258,11 @@ manipulation of flow cytometry data.")
        (sha256
         (base32
          "0a74lb36482djxfr77akyqqa7wnj9y3g4fkn8ain2gsbb3l6kcbk"))))
-    (properties `((upstream-name . "ggcyto")))
+    (properties
+     `((upstream-name . "ggcyto")
+       ;; Avoid dependency cycle.
+       (updater-ignored-native-inputs . ("r-flowstats"))
+       (updater-extra-native-inputs . ("r-flowworkspacedata"))))
     (build-system r-build-system)
     (propagated-inputs
      (list r-data-table
@@ -20273,7 +20277,7 @@ manipulation of flow cytometry data.")
            r-rlang
            r-scales))
     (native-inputs
-     (list r-knitr r-testthat))
+     (list r-flowworkspacedata r-knitr r-opencyto r-testthat r-vdiffr))
     (home-page "https://github.com/RGLab/ggcyto/issues";)
     (synopsis "Visualize Cytometry data with ggplot")
     (description