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07/10: gnu: Add r-sesamedata.
From: |
guix-commits |
Subject: |
07/10: gnu: Add r-sesamedata. |
Date: |
Mon, 28 Aug 2023 13:10:44 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 6b1946d2e28d3680aa57d94b7ce27430d38c077b
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Mon Aug 28 18:03:28 2023 +0200
gnu: Add r-sesamedata.
* gnu/packages/bioconductor.scm (r-sesamedata): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d593c84d4b..b94c134b1b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1996,6 +1996,40 @@ cultures from 4 patients at 2 time points over 3
conditions (DPN, OHT and contro
;; The author(s) mentions only LGPL without any specific version.
(license license:lgpl2.1+)))
+(define-public r-sesamedata
+ (package
+ (name "r-sesamedata")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "sesameData" version
+ 'experiment))
+ (sha256
+ (base32
+ "1fvxs5n6bj2j0k3vgnaiksshkaxw7fmx6k22rjd3fsqg3cz60fm6"))))
+ (properties `((upstream-name . "sesameData")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-annotationhub
+ r-experimenthub
+ r-genomeinfodb
+ r-genomicranges
+ r-iranges
+ r-readr
+ r-s4vectors
+ r-stringr))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/sesameData")
+ (synopsis "Supporting Data for SeSAMe Package")
+ (description
+ "This package provides supporting annotation and test data for
+@code{SeSAMe} package. This includes chip tango addresses, mapping
+information, performance annotation, and trained predictor for Infinium array
+data. This package provides user access to essential annotation data for
+working with many generations of the Infinium DNA methylation array. It
+currently supports human array (HM27, HM450, EPIC), mouse array (MM285) and
+the @code{HorvathMethylChip40} (Mammal40) array.")
+ (license license:artistic2.0)))
+
(define-public r-tcgabiolinksgui-data
(package
(name "r-tcgabiolinksgui-data")
- branch master updated (3350e871a8 -> c8a642de9a), guix-commits, 2023/08/28
- 04/10: gnu: Add r-derfinder., guix-commits, 2023/08/28
- 03/10: gnu: Add r-sangerseqr., guix-commits, 2023/08/28
- 02/10: gnu: Add r-rtcga., guix-commits, 2023/08/28
- 08/10: gnu: Add r-sesame., guix-commits, 2023/08/28
- 09/10: gnu: Add r-lea., guix-commits, 2023/08/28
- 05/10: gnu: Add r-rdisop., guix-commits, 2023/08/28
- 07/10: gnu: Add r-sesamedata.,
guix-commits <=
- 01/10: gnu: Add r-arrayqualitymetrics., guix-commits, 2023/08/28
- 06/10: gnu: Add r-enrichedheatmap., guix-commits, 2023/08/28
- 10/10: import-utils: Do not include punctuation when wrapping in @code{}., guix-commits, 2023/08/28