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01/05: gnu: Add r-affyilm.
From: |
guix-commits |
Subject: |
01/05: gnu: Add r-affyilm. |
Date: |
Mon, 20 Mar 2023 13:28:13 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 284b5eca603ade3460474f0b97c85e17dd2dde39
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Mon Mar 20 17:00:01 2023 +0100
gnu: Add r-affyilm.
* gnu/packages/bioconductor.scm (r-affyilm): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index e54c9ccf2b..20d1df89b8 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2098,6 +2098,33 @@ impute GReX can be trained with a training dataset where
the real total
expression values are known.")
(license license:gpl3)))
+(define-public r-affyilm
+ (package
+ (name "r-affyilm")
+ (version "1.50.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "affyILM" version))
+ (sha256
+ (base32 "0i2hjaqjz06ym5kbw5da1h3cahc630mjwljsji1l2ks0gjcipll0"))))
+ (properties `((upstream-name . "affyILM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-affxparser
+ r-affy
+ r-biobase
+ r-gcrma))
+ (home-page "https://bioconductor.org/packages/affyILM")
+ (synopsis
+ "Linear model of background subtraction and the Langmuir isotherm")
+ (description
+ "The affyILM package is a preprocessing tool which estimates gene
+expression levels for Affymetrix Gene Chips. Input from physical chemistry is
+employed to first background subtract intensities before calculating
+concentrations on behal of the Langmuir model.")
+ (license license:gpl3)))
+
(define-public r-affyrnadegradation
(package
(name "r-affyrnadegradation")