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05/06: gnu: Add r-metagenomeseq.
From: |
guix-commits |
Subject: |
05/06: gnu: Add r-metagenomeseq. |
Date: |
Wed, 1 Mar 2023 18:10:21 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 3e4de18d3ea5ec6230d239af797f1ea9884cf38f
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Thu Feb 23 01:35:43 2023 +0100
gnu: Add r-metagenomeseq.
* gnu/packages/bioconductor.scm (r-metagenomeseq): New variable.
---
gnu/packages/bioconductor.scm | 34 ++++++++++++++++++++++++++++++++++
1 file changed, 34 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 45798e191f..5d99a4e8ce 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6695,6 +6695,40 @@ experiments.")
and visualizaton of alternative splicing events generated by rMATS.")
(license license:expat)))
+(define-public r-metagenomeseq
+ (package
+ (name "r-metagenomeseq")
+ (version "1.40.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "metagenomeSeq" version))
+ (sha256
+ (base32 "01wjw4kcm8ysa5sn3cqg4a9i5pyksnwmbdqp5fr6n2l9hllkc9jy"))))
+ (properties `((upstream-name . "metagenomeSeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-biobase
+ r-foreach
+ r-glmnet
+ r-gplots
+ r-limma
+ r-matrix
+ r-matrixstats
+ r-rcolorbrewer
+ r-wrench))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/HCBravoLab/metagenomeSeq")
+ (synopsis "Statistical analysis for sparse high-throughput sequencing")
+ (description
+ "MetagenomeSeq is designed to determine features (be it @acronym{OTU,
+Operational Taxanomic Unit}, species, etc.) that are differentially abundant
+between two or more groups of multiple samples. This package is designed to
+address the effects of both normalization and under-sampling of microbial
+communities on disease association detection and the testing of feature
+correlations.")
+ (license license:artistic2.0)))
+
(define-public r-metaneighbor
(package
(name "r-metaneighbor")
- branch master updated (f0f5f01197 -> 7dc190f83e), guix-commits, 2023/03/01
- 01/06: gnu: Add r-biglm., guix-commits, 2023/03/01
- 03/06: gnu: Add r-som., guix-commits, 2023/03/01
- 04/06: gnu: Add r-chemometrics., guix-commits, 2023/03/01
- 06/06: gnu: Add r-maaslin2., guix-commits, 2023/03/01
- 05/06: gnu: Add r-metagenomeseq.,
guix-commits <=
- 02/06: gnu: Add r-cplm., guix-commits, 2023/03/01