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branch master updated: gnu: Add r-metaneighbor.
From: |
guix-commits |
Subject: |
branch master updated: gnu: Add r-metaneighbor. |
Date: |
Thu, 01 Dec 2022 05:42:04 -0500 |
This is an automated email from the git hooks/post-receive script.
rekado pushed a commit to branch master
in repository guix.
The following commit(s) were added to refs/heads/master by this push:
new a712c07d6a gnu: Add r-metaneighbor.
a712c07d6a is described below
commit a712c07d6ada1160855c583556e854ccb48c47e1
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Tue Nov 29 09:00:56 2022 +0100
gnu: Add r-metaneighbor.
* gnu/packages/bioconductor.scm (r-metaneighbor): New variable.
---
gnu/packages/bioconductor.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 62fb7cfcf8..c62c5970b8 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6010,6 +6010,42 @@ reduction (between group analysis) and joint dimension
reduction of two
datasets (coinertia analysis).")
(license license:artistic2.0)))
+(define-public r-metaneighbor
+ (package
+ (name "r-metaneighbor")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MetaNeighbor" version))
+ (sha256
+ (base32
+ "1gjjp5qlmv26sd3fvrd8cgv3invckxr8ldjpizpqm4mxjzifxwpm"))))
+ (properties `((upstream-name . "MetaNeighbor")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-beanplot
+ r-dplyr
+ r-ggplot2
+ r-gplots
+ r-igraph
+ r-matrix
+ r-matrixstats
+ r-rcolorbrewer
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-tibble
+ r-tidyr))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/MetaNeighbor")
+ (synopsis "Single cell replicability analysis")
+ (description
+ "This package implements a method to rapidly assess cell type identity
using
+both functional and random gene sets and it allows users to quantify cell type
+replicability across datasets using neighbor voting. @code{MetaNeighbor} works
+on the basis that cells of the same type should have more similar gene
expression
+profiles than cells of different types.")
+ (license license:expat)))
+
(define-public r-methylkit
(package
(name "r-methylkit")
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