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07/08: gnu: Add r-mia.
From: |
guix-commits |
Subject: |
07/08: gnu: Add r-mia. |
Date: |
Thu, 24 Nov 2022 12:03:18 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 139da51753717a06692bd87a754f54b4e60f4fcd
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Thu Nov 24 17:59:52 2022 +0100
gnu: Add r-mia.
* gnu/packages/bioconductor.scm (r-mia): New variable.
---
gnu/packages/bioconductor.scm | 48 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 48 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 17d5195ce5..0d4110bc20 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -10027,6 +10027,54 @@ to identify differentially methylated regions in
epigenetic epidemiology
studies.")
(license license:artistic2.0)))
+(define-public r-mia
+ (package
+ (name "r-mia")
+ (version "1.6.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "mia" version))
+ (sha256
+ (base32
+ "0yz88ggv6d5rccdwzixwg9y1bc4xysazlmv1ph88wxs8r6fcmync"))))
+ (properties `((upstream-name . "mia")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ape
+ r-biocgenerics
+ r-biocparallel
+ r-biostrings
+ r-decipher
+ r-decontam
+ r-delayedarray
+ r-delayedmatrixstats
+ r-dirichletmultinomial
+ r-dplyr
+ r-iranges
+ r-mass
+ r-multiassayexperiment
+ r-rlang
+ r-s4vectors
+ r-scater
+ r-scuttle
+ r-singlecellexperiment
+ r-summarizedexperiment
+ r-tibble
+ r-tidyr
+ r-treesummarizedexperiment
+ r-vegan))
+ (native-inputs (list r-knitr))
+ (home-page "https://github.com/microbiome/mia")
+ (synopsis "Microbiome analysis")
+ (description
+ "The mia package implements tools for microbiome analysis based on the
+@code{SummarizedExperiment}, @code{SingleCellExperiment} and
+@code{TreeSummarizedExperiment} infrastructure. Data wrangling and analysis
+in the context of taxonomic data is the main scope. Additional functions for
+common task are implemented such as community indices calculation and
+summarization.")
+ (license license:artistic2.0)))
+
(define-public r-microbiome
(package
(name "r-microbiome")
- branch master updated (a8c36bf8c4 -> c29d999a34), guix-commits, 2022/11/24
- 04/08: gnu: Add r-ecosolver., guix-commits, 2022/11/24
- 03/08: gnu: Add r-scs., guix-commits, 2022/11/24
- 08/08: gnu: r-ancombc: Update to 2.0.1., guix-commits, 2022/11/24
- 02/08: gnu: Add r-osqp., guix-commits, 2022/11/24
- 06/08: gnu: Add r-treesummarizedexperiment., guix-commits, 2022/11/24
- 07/08: gnu: Add r-mia.,
guix-commits <=
- 01/08: gnu: Add r-ancombc., guix-commits, 2022/11/24
- 05/08: gnu: Add r-cvxr., guix-commits, 2022/11/24