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03/04: gnu: Add r-aims.
From: |
guix-commits |
Subject: |
03/04: gnu: Add r-aims. |
Date: |
Thu, 24 Nov 2022 09:37:44 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 2e85d26ebb5be6f7c52a9f2d780e0ae34fd40692
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Mon May 2 11:49:55 2022 +0200
gnu: Add r-aims.
* gnu/packages/bioconductor.scm (r-aims): New variable.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cd9fa0d2fe..179551c2f0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2107,6 +2107,30 @@ using the linear model features implemented in limma.
Standard Bioconductor
objects are used so that other packages could be used as well.")
(license license:gpl3)))
+(define-public r-aims
+ (package
+ (name "r-aims")
+ (version "1.28.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AIMS" version))
+ (sha256
+ (base32
+ "1z7yzaizyzcv556w8880603nd947k0d6raadjm42mdl66mma0cdx"))))
+ (properties `((upstream-name . "AIMS")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-biobase r-e1071))
+ (home-page "https://git.bioconductor.org/packages/AIMS")
+ (synopsis
+ "Absolute assignment of breast cancer intrinsic molecular subtype")
+ (description
+ "This package contains an implementation of @code{AIMS} -- Absolute
+Intrinsic Molecular Subtyping. It contains necessary functions to assign the
+five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched,
+Basal-like, Normal-like). Assignments could be done on individual samples as
+well as on dataset of gene expression data.")
+ (license license:artistic2.0)))
+
(define-public r-airpart
(package
(name "r-airpart")